barSeed - Barley Seed Development Database

Probe CUST_37523_PI390587928

Source Contig U35_26895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37523_PI390587928	Hv_44K_v2	ACTTGCTCCTGCAATACTAAGCCTGCTTGCGTCACGCATAATCTATGAAGATGCAGACTT	964	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.964	0.844	2.131	1.895	0.546	0.500
Raw	28.722	39.029	84.836	117.751	12.620	11.954

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60426.2	6879	7e-23	1203 - 1262	98	59 / 60	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.5	7355	7e-23	1186 - 1245	98	59 / 60	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.4	7390	7e-23	1203 - 1262	98	59 / 60	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.3	7290	7e-23	1203 - 1262	98	59 / 60	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.1	6688	7e-23	1203 - 1262	98	59 / 60	minus	ABC17350 ABC35051 ABC37315 ABC37969
JLOC1	JLOC1_39400.2	6904	4e-23	5646 - 5705	98	59 / 60	plus
JLOC1	JLOC1_39400.1	6875	4e-23	5617 - 5676	98	59 / 60	plus
Harvest21	ABC25643	1112	3e-25	965 - 1024	100	60 / 60	plus
Harvest35	U35_26895	1112	3e-25	965 - 1024	100	60 / 60	plus

Contig Sequence (1112 bp)

>U35_26895 1112 Hv_44K_v2
GGGAGAGGCTTGTTCAGTCCCTAGATACCCTCCAACCTGCAAAATTCCATTGGCAATGGG
TTGAGTTGAGGCTGCTTTTAGATGAACAGGCTCTCGCAGAAAAACTTGATAAAGCTGAAA
AAAGTAAGATACCGATGCCGATACTGATGACACTTGCAGATGGGCTTCGGAAGCTGTCTC
CTAATTCTGAGAGCTTTACCCTATCTGAAAGCGAGAAAGGGTTTACTGAAATCATCCTGT
CGAGATTAGTTGCCAGACCTGATGCTGCTCCTCTCTACTCTGAAGTTGTCCACCTTCTTG
GGAAGCTACAGGAGTCACTTGTCGTGGATGTCAAATGGATCCTTCAAGGGCAAGATGCGG
TTCTGGGACGCAAGTCCACAAGACAGCAGCTTCTTACTATTGCTACACGAAGAGGTGTTC
CAATAAAGGCACAGGTTTGGAAACCGTGGGGATGGTCCAGCTTGCTTTCTGATGTAATGG
CTAACAGAAGTGCCAAGAGGAAATTGGAAGCTGCTCCGATTGAGGAAGGAGAAGTTGTGG
ATGATTCTGCCGATGCCAAAAGGCCAAGCAAAAGTACCCTGCATATTAATAAATATGTAA
CTGAGAAAGCCTTTGCTGAATTAATGTTGCCATGCATCGACAGGAGTTCTCCTGAATTTC
GCAGCATATTTGCTGGTGAATTGATCAAACAGATGGGAACTGTCAGTGAACACATCAAAG
CAATATCACGAAATGGTGCCAAACAGGTTGGTTTAGTTCCTTCAGGAAATGATGTTTCGT
CGAACAAATCCAGTGGTCGTAGAGGAATTCGAGGTGGAAGTCCAAATATTGGCAGGCGAG
GCACGGTGGGTAATGATCCAACTCCTCCTTCAGCATCTGCACTGCAGGCCATAGTGTGGT
TGCGCCTCCAATTTATCATCAGGTTGCTTCAAGTGATCCTGGCAGATAGGGGCATGAGAC
ATACACTTGCTCCTGCAATACTAAGCCTGCTTGCGTCACGCATAATCTATGAAGATGCAG
ACTTCCCCCCTCCCCCTGCCAGTCCGATCGCCTCAAGACGGGAAGTGGACTCTTTGCTGG
AACCTCCCATGGATGTCTTGCTTGATCGCCCA

Homology of Contig U35_26895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45400.1	2176	3e-157	protein\|expressed protein
Brachypodium v1_2	Bradi1g21177.1	2143	2e-161
Arabidopsis v10	AT4G00450.1	2253	1e-77	\| Symbols: CRP, CCT \| RNA polymerase II transcription mediators \| chr4:202425-210666 FORWARD LENGTH=2253