barSeed - Barley Seed Development Database

Probe CUST_37522_PI390587928

Source Contig U35_26896

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37522_PI390587928	Hv_44K_v2	CTACGCTGGATCTTACAACTGTTGTGTAAGGATGTGCTTGGTTTCTTGCCTCCCAAAAAA	558	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.781	1.720	1.160	0.812	0.413	0.412
Raw	1416.797	2180.816	1272.036	1406.022	247.822	269.357

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38614.3	605	9e-22	386 - 440	100	55 / 55	plus	ABC26028
MLOC	MLOC_38614.4	628	9e-22	502 - 556	100	55 / 55	plus	ABC26028
MLOC	MLOC_38614.1	628	9e-22	409 - 463	100	55 / 55	plus	ABC26028
MLOC	MLOC_38614.2	578	9e-22	386 - 440	100	55 / 55	plus	ABC26028
JLOC1	JLOC1_25129.2	612	5e-22	412 - 466	100	55 / 55	plus
JLOC1	JLOC1_25129.1	622	5e-22	422 - 476	100	55 / 55	plus
Harvest21	ABC26028	629	3e-25	12 - 71	100	60 / 60	minus	ABC26028
Harvest35	U35_26896	629	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_26896 629 Hv_44K_v2
GCGAAAAGACTGCACCTTGGCCCGCACCCGCCGGCGTGACCTCGGCGTTGGGAGGCGGCG
GCCGCTGACGCCGCGGCCGCTGACGCCGCGGCCGAGAGCGTCAGCGGTAGACTGACGAGT
TGCCACCGCCACCGCCACCGCCACCGTTCTCAGCCAGAGGCGACCGCCCCCGCCAAGACT
CAGACAGATCGATCGACCGGAGCCATGCCTCTCCCCGCCAACCGTGTAATGGGATCCGCC
TTCGTCGCGTTCGGCGTCACGCTCCTCGCCGGCTTCCTGTACGTCGCCGTCGGGTCCAAG
GCCCTCGCGCCGTCCGACAACTGGTTCTTGCTCGCCGTCCAAAACGACAGGTACTACTGC
TTGCTTGTGCCCCTGACCGTCCCTGTCATAATCGTGGCTGTGTATCTGCATTGGCTGAGC
ATGAAGATGTTCAAGCATGCGTGAGGGGTGCTACAGTCATGCAAAACGAAACCCATCATC
AGTTCATCGCTCTTAAGATTGTGGTATTTTTGTTTTGTTTATTATACAGTGTAAGACAAA
GTTCCTGTGGTGGAGAAACTACGCTGGATCTTACAACTGTTGTGTAAGGATGTGCTTGGT
TTCTTGCCTCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None