barSeed - Barley Seed Development Database

Probe CUST_37507_PI390587928

Source Contig U35_38885

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37507_PI390587928	Hv_44K_v2	ATGTGTATATGTATACGTGCGAATGTACTGGGTACAATGTAGGCCTTCAAAGTTAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354246	1660	9e-22	1591 - 1645	100	55 / 55	plus	None
MLOC	MLOC_57229.1	2111	9e-22	294 - 348	100	55 / 55	minus	None
JLOC1	JLOC1_37052.1	2117	5e-22	250 - 304	100	55 / 55	minus
Harvest35	U35_38885	531	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (531 bp)

>U35_38885 531 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACTTTGAAGGCCTACATTGTACCCAGTACATTCGCACGTATA
CATATACACATTTATGCATACTCATTTGCTGGAGTACAAAACCTCCGGCCCCACCCACCC
GCGTGTGACGTGTCCTATATATACACACAATCCAAGGGCAAAACTGTCAATTGCACGATG
ACCACCCCCAGGAAAAAAAATGGGAATTCGATCCCCTCTGCTTCCCTCGCAAAATTCTTG
GAGCTCTCCCGAATGACAAACTTCCCTCCAAATCCAATCCTGGCGCCCGCATGCATGATA
CGCCGTGTTTCCTCTTCGATCTGCCCGCCCCTCGCCTCGACCAGTGCCAGCTCTCAATCA
ATCGAATCGATCGATCGGTCATGGCGGCTCATTCATCAAACACGGTTACGGCGGCGGCTC
ACTCCTCCATGGCGGTGGCGGCGGCGGCCTTGTACAGGTCGTAGGGCTCCCAAAGGTAGT
CGACGGTCCACGGCTTCCGGGTGTCGACCCGCAGCCACGGCTTCCCCTTCC

Homology of Contig U35_38885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None