barSeed - Barley Seed Development Database

Probe CUST_37506_PI390587928

Source Contig U35_38886

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37506_PI390587928	Hv_44K_v2	TATACAGTGGCCACCAAGACTTGCGTCGATGAGGCGCACGTGTACCACCTCGGGGACGAC	400	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353826	1574	7e-23	442 - 501	98	59 / 60	plus	None
MLOC	MLOC_41620.1	428	7e-23	309 - 368	98	59 / 60	minus	None
JLOC1	JLOC1_27088.1	416	4e-23	295 - 354	98	59 / 60	minus
Harvest21	ABC34858	499	3e-25	401 - 460	100	60 / 60	plus
Harvest35	U35_38886	499	3e-25	401 - 460	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_38886 499 Hv_44K_v2
GGCAGCAATGGACGGCGGCTCCTCCTTCCAGGCCGTCGCGGCCGCCGCGGCCGCCGCCGA
CGCGGAGATGGAGGAGTACCTCAACTGGAAGAAGAACACGCCGGTGCTCTACGACCTCGT
CATGTCGCACCCGCTCGAGTGGCCCTCGCTCACCGTCCAGTGGTTCCCCTCGGGGTCGCC
GGCCGCCGCCCGCTCCCACCGCCTCGTCCTCGGCACCCACGCCTCCGACGACTCCCCCAA
CCACCTCATGCTCGTCGACGCCGTCCTCCCGCTCCCGCCGCGCCTGGCCGCGGCGGCGGC
CGCCGAGGGCCGCGCCGTCCCGGCCCCGTCCGTGTCCATCGGCCGCTCGGCGCCGCATCA
GGGCGAGGTTAATCGCGCCCGGTGCATGCCGCAGCAGCCATATACAGTGGCCACCAAGAC
TTGCGTCGATGAGGCGCACGTGTACCACCTCGGGGACGACGGCGAGAAGCGGGGCGCGGA
TGTCGTGCTCAGGGGTCAT

Homology of Contig U35_38886 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36900.1	411	3e-65	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g36580.1	407	9e-68
Arabidopsis v10	None