barSeed - Barley Seed Development Database

Probe CUST_37504_PI390587928

Source Contig U35_38888

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37504_PI390587928	Hv_44K_v2	TTTCATTGGCTCAGATTCCAAGCCTTGTGTCATTCAATGTGTCACACAATGACCTTGCCG	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37098.1	3543	2e-24	1934 - 1993	100	60 / 60	plus	ABC26292
MLOC	MLOC_37098.2	4076	2e-24	1934 - 1993	100	60 / 60	plus	ABC26292
JLOC1	JLOC1_23980.1	3836	8e-25	1862 - 1921	100	60 / 60	plus
Harvest21	ABC34860	633	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_38888	633	3e-25	488 - 547	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_38888 633 Hv_44K_v2
GCACAGCTGCAGCATGTGTCGCTCGCCGACAACTCGTTCTCCGGCGATGTTCCAGAAGGG
TTCAGCAGTCTGTGGAGTCTGCGGCACCTCAACATTTCTGTCAATTCTTTCGCGGGGTCA
ATCCCGGCTACATATGGGTACATGGCATCGCTCCAGGTGCTCTCGGCCTCCCACAACCGC
ATCTCCGGCGAGGTGCCAGCAGAGCTCGCCAATTGTTCCAACCTCACTGTGCTTGACCTC
AGTGGCAACCATCTCACTGGCCCAATACCGAGTGACCTCTCCAGGCTTGACGAACTCGAA
GAGCTTGACCTCAGCCACAATCAGCTGTCCAGCAAGATACCACCAGAGATCTCCAACATT
TCCTCACTAGCCACTCTCAAGCTTGATGACAACCATCTTGTCGGGGAGATACCGGCCTCT
CTCGCCAACCTCTCGAAGCTGCAGGCACTTGATCTGTCATCCAACAGCATTACAGGCAGC
ATCCCTGTTTCATTGGCTCAGATTCCAAGCCTTGTGTCATTCAATGTGTCACACAATGAC
CTTGCCGGAGAGATACCGCCAGTGCTCGGCTCCCGCTTTGGCACGCCCTCGGCATTTGCT
TCCAACCGAGACTTGTGTGGTCCGCCATTGGAG

Homology of Contig U35_38888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g48760.1	1105	7e-101	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi5g19017.1	1162	9e-106
Arabidopsis v10	AT4G36180.1	1136	8e-59	Leucine-rich receptor-like protein kinase family protein \| chr4:17120209-17123698 REVERSE LENGTH=1136