barSeed - Barley Seed Development Database

Probe CUST_37503_PI390587928

Source Contig U35_38890

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37503_PI390587928	Hv_44K_v2	TACTTGGATCAATGAAGCTCTCATTTCCATCCCGAGTCTTTGACATGGCACATTGCTCGA	165	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.243	1.295	1.239	0.770	0.414	0.263
Raw	29.609	45.694	39.067	40.852	6.223	4.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58342.3	3292	2e-24	1173 - 1232	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.4	4398	2e-24	2279 - 2338	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.5	4137	2e-24	2135 - 2194	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.1	1989	2e-24	1209 - 1268	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.8	2085	2e-24	1026 - 1085	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.6	3132	2e-24	1029 - 1088	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.2	4330	2e-24	2208 - 2267	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.7	4221	2e-24	2241 - 2300	100	60 / 60	plus	ABC21277
MLOC	MLOC_58342.9	3224	2e-24	1128 - 1187	100	60 / 60	plus	ABC21277
JLOC1	JLOC1_37896.2	3487	8e-25	2133 - 2192	100	60 / 60	plus
JLOC1	JLOC1_37896.1	2389	8e-25	1035 - 1094	100	60 / 60	plus
Harvest21	ABC34862	226	3e-25	166 - 225	100	60 / 60	plus
Harvest35	U35_38890	226	3e-25	166 - 225	100	60 / 60	plus

Contig Sequence (226 bp)

>U35_38890 226 Hv_44K_v2
CCGAGGGGAAAGTGAGAACTGCACTCGACACTGGTTGTGGGGTTGCCAGTTTGGGTGCTT
ACCTGTTGAAGAAAAATGTTCTGACTATGTCATTCGCTCCAAAAGATAATCATGAGGCAC
AAGTACAGTTTGCACTGGAGAGAGGTGTACCTGCCTATATCGGTGTACTTGGATCAATGA
AGCTCTCATTTCCATCCCGAGTCTTTGACATGGCACATTGCTCGAG

Homology of Contig U35_38890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None