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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_374_PI390587928Hv_44K_v2GCAGTTTGTGCATTGTAGGAACTAGGCAATCGGACTATTACTACTTTATTATTTTTCACT822GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3840.9021.5441.7050.9601.955
Raw 2.81317.88827.93854.2069.44721.993



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_14846.313976e-211188 - 12469758 / 60plus
JLOC1JLOC1_14846.213926e-211183 - 12419758 / 60plus
JLOC1JLOC1_14846.112446e-211035 - 10939758 / 60plus
Harvest21ABC207589323e-25823 - 88210060 / 60plusABC20758
Harvest35U35_93499323e-25823 - 88210060 / 60plus



Contig Sequence (932 bp)

>U35_9349 932 Hv_44K_v2
CAGTAGACCTGAGTACCAAGCTGGTTTCGAAGATCTGAGATTTCTACCTCAGCTACACGC
TCCATCTCCAAGGAGATAACAGAGATAATTAGAAAGCTTGAGAGGTCCGAGAAGGACCTC
GACCTGATGAACCAAAAGTTCGAGCAGTCTCAAACGTTGGCCGAGATTGAGCAGCTCAAG
GCCGAGCTTAAAGAAGATCGACAAGACGCAGAGCAGCAAAAGGTTGCGTCTGCAAATGCA
GAGGAGGCGTGCACTGTCAAGAATGTCGCCCGGGAAAGGGACCAAGCGTGAGTATAGGAG
CTCGAAGAGACCCTGAAGGGCATGTACGAAACACGCGACAAACTTCAGGCAAAGGGCACA
CAAATGAAGGAAGGGCTCAAGAATCTTCAGCTTGCGAACTCCAAACTCCAGACCGCAACG
TGCTCCAACCATTAGGAGCTTCGGGAAGTGAAGCAAGTGCCCGCGGGCCACATATTTAAA
GCAGTGTGTGTTTGGCACAGAAGGGTGTGTCGAGCTTACCACGTTGTGGAATTCCGTAGA
GGTTCTAGCATATCTTTTGAAGAGCATGGCAGAAGTTTTCCAGTACTTTGGCCAGCAGGA
GGGCCACGAGGAGGAGAAGGCATTTTAGCAACAGTTCCCGGATGCTACGTCATCACAACT
GCTGAACGATGAGATGAAGCGGTTGACGGAGCTACTTTGTGTGGCGAGGCCGTCACTCCA
AGACATGTGTATCAAGTCGGGAGCTTTTGCCCCAATGTAGAGTATACAGAGGGTGTTCCT
TGATGCAACTCTCGCCCTTAGCCGGTGTTTAGGTAACCGAAGGCAGTTTGTGCATTGTAG
GAACTAGGCAATCGGACTATTACTACTTTATTATTTTTCACTTAGTCATAGGAGTTTGAA
AAAAAAAAAAAAAGGGAGGGNCCCGGTACCCA



Homology of Contig U35_9349 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None