barSeed - Barley Seed Development Database

Probe CUST_37499_PI390587928

Source Contig U35_38894

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37499_PI390587928	Hv_44K_v2	ATCCATGATGAATAAGCATGAACATCTTTATCTTCAGGCACCATGTCCATGTTCCCAGGG	455	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36980.2	1537	2e-24	229 - 288	100	60 / 60	plus	ABC04073 ABC04074
MLOC	MLOC_36980.1	3046	7e-23	508 - 567	98	59 / 60	plus	ABC04073 ABC04074
Harvest21	ABC34865	608	3e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_38894	608	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_38894 608 Hv_44K_v2
GGCATGGCGACTGAAGCCGTAGGCACGCCCCGCTCCCTCCCTCCTCTAATTTCCGTACCG
CACATGCCGAGGGGGAGCCGCTGGGCGGCGCCTGGCGACGACGGAAGGCTGACGCCGATC
TGGATTTGGGTGCGCTAGGTGGTCGGGGCGCAGTTCCTCCATCGACATCGTTGCCGGTGC
TTGGTTGCTGCTGTCCCGTGGGGTGGGGGGATGCGAGCGGGCGGGGGGCGTCGGGAAGGC
CGTGGGGGAAGGANAGGGGGCGTGGGCATGGNGCCAAATCCGGAGAGGGGATCTTTAGGA
GTGACTCCAAATGAGCATTTGGAGATTCGGTTCTATTCCCTACTTGGTTACTTGCTCTTA
ACTATCTTGAAAATGATCACACATGCCTTCACGCTCTCGGTGTTCTGTTCTTCCCATGCT
ACCTTTTTTCTGAATAATCATTAGCTTAAGTTCATATCCATGATGAATAAGCATGAACAT
CTTTATCTTCAGGCACCATGTCCATGTTCCCAGGGATGGACCTTACCAAAATGGACCCTC
CAACACTTACCCTCCTTGGAGCAGCCTGTTGTGTAATGTTATCGATGCATTTCACAGTGC
AGTTGGTA

Homology of Contig U35_38894 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None