barSeed - Barley Seed Development Database

Probe CUST_37494_PI390587928

Source Contig U35_38899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37494_PI390587928	Hv_44K_v2	TCGACGAAATGCTTCGTCTTATCGCGGAGGCCGTCCTTAACCGCCTCTCCGGAGCCGATC	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370682	2683	7e-23	664 - 723	98	59 / 60	plus	ABC16054
MLOC	MLOC_71439.1	2068	7e-23	1488 - 1547	98	59 / 60	minus	None
JLOC1	JLOC1_47482.1	1248	4e-23	809 - 868	98	59 / 60	minus
Harvest21	ABC34873	439	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_38899	439	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (439 bp)

>U35_38899 439 Hv_44K_v2
GGAGGCCTTCTTCCCAGCCTCGCGACGGCGGCCGCCATGAGAGCCCTCCTCTCCCTTTCC
AGCTTGCCCGTCGTCTCCCCACCCCCCTGCCCGCCACCAGGGTCGCAGCGCCCCTCCTCC
AACGGCACCTCCATGCCGACACCGCACCTCCTCCTCAAACGCCGCCCCCCTTTGCCTCCC
GTATCCTCCAATCCGAAGAGAGCCCGCCCCCGAGCACTAGTTGGAACATGCTCAGCCCGC
CCCCGACCCTGTCCTCGATGAGTTCCTCGCCCGCTTGGTCACCGCGCTCCGTCCGACACT
TGCTGCCGCCTTCCCCACCCACACCCGCCTCGTGCTCGACGAAATGCTTCGTCTTATCGC
GGAGGCCGTCCTTAACCGCCTCTCCGGAGCCGATCCGGGGCCAGACACCGTCGAGCTCAG
CGACGACCTCTGGGCGGCG

Homology of Contig U35_38899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None