barSeed - Barley Seed Development Database

Probe CUST_37493_PI390587928

Source Contig U35_9800

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37493_PI390587928	Hv_44K_v2	CAGTGGAGGTCCTTAACCTGTAAATTTTGTGCGCTCTTGTATTGATTTATTCAAGAAAAA	717	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.525	1.937	1.007	0.824	0.507	0.498
Raw	21.969	42.959	19.582	26.072	4.355	4.824

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33272.2	1740	6e-21	1396 - 1452	98	56 / 57	plus
JLOC1	JLOC1_33272.1	1623	6e-21	1279 - 1335	98	56 / 57	plus
Harvest21	ABC20211	787	3e-25	718 - 777	100	60 / 60	plus	ABC20211
Harvest35	U35_9800	787	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (787 bp)

>U35_9800 787 Hv_44K_v2
TGACGCAAGCTGTGGAAGTGGGTTATTTTCAAGATTATTTGTTAAAAGCGAACTATATTG
CCTTGTTGTGGCACTGGATTTCTCCGAGAATATGTTGAAGCAATGCAAGGAATTCATCAA
GCAGGAAAACATCTCAGACGAGCGATTAGTATTGGTGAGAGCTGATATATCCAGACTCCC
TTTTGTGAGTGGCTCAATTGATGCTCTGCATGCAGGTGCTGCAATTCACTGTTGGCCATC
CCCAGCTTGTGCTATTGCAGAGATCAGTCGAGTCCTTCGCCCTGGGGGTATTTTTGTCGG
TTCTACTTTCATAGCAGATGTTCTTCCGCCAGTTATCCCATTACTGAGGATTGGACGCCC
GTACATTGATCAAATCACAGGCAACAATACCTTCTTATCAGAGCTGGAGCTTGAAGATCT
TTGTAGAGCATGTGGGCTGGTTAATTTTACATTTGTCAGAAATGGATTCTATATAATGTT
CTCTGCTACTAAAGCAAGCTAGTTAAATAACTGCAGAGTCACCTGAAACATTATCGCATA
GCTCCTTGATTATGCATTGTTCCTTATGAGCCACCCTTTCTGTCAGCACCGATAGTTTTG
GTCAAGGTATGTGTGATGTGAATAGTGAAAGCGTACATTTTACTTCACTGGCGTCATAGT
GAGATTGATCATAGGAATTATTTATGTAAAAGTTCAAGAAAAGATCTTCATGTAAAGCAG
TGGAGGTCCTTAACCTGTAAATTTTGTGCGCTCTTGTATTGATTTATTCAAGAAAAAAAA
AAAAAAA

Homology of Contig U35_9800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31750.1	359	5e-97	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g35630.1	362	1e-100
Arabidopsis v10	AT1G78140.1	355	2e-68	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:29401937-29403878 REVERSE LENGTH=355