barSeed - Barley Seed Development Database

Probe CUST_37492_PI390587928

Source Contig U35_9801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37492_PI390587928	Hv_44K_v2	TACAAAAGTCGAGGAACTTAAAGTGGATGTAGCCTCTATGGATGTTGAAATCTCTGCTCT	571	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.665	0.934	1.424	1.746	0.704	0.995
Raw	53.297	112.738	154.322	312.063	41.428	64.831

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71276.2	1021	2e-24	399 - 458	100	60 / 60	plus	None
MLOC	MLOC_71276.1	1365	2e-24	690 - 749	100	60 / 60	plus	None
JLOC1	JLOC1_47356.1	1345	8e-25	648 - 707	100	60 / 60	plus
Harvest21	ABC19332	629	4e-24	572 - 629	100	58 / 58	plus
Harvest35	U35_9801	631	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_9801 631 Hv_44K_v2
GGCGCACTCCGTCATAGAACCGGTCCACCACGCCCGCAGTCCACTCCCAGCGCCGCCCGT
CCCTCCGCCGCCGCCGCCGCCGCCGCCGGAGAAGACCAAGATGGCCGAGAAGACGGCGGG
CCCGGCCTCCAGGTCCAGGATCCGGGGCGGGCTCGCCCCCTCCGCGCCCTCCTCCAGGAG
GGTGGTGTCGATGGCGTACACGGCGGCTCCGCATCAGGCCAAGAAGGTTCCTGAGCCAAA
GGTTGTCAAGCCAACCAGAACCACGCCCGCCAAGAGGCGGCAGCAGCCGGATCAGGGGCA
GAAGCAGAGGGAAGAGCGCGCTGCTCTGCAGGAGCAGCTCAGTGGCCTGCAAGACAAGCT
GCTTGAGAAGGACGAAGCTCTGCGGTCCGCGGAGAACTTGATTGGCAGGGTCAGTGCCGC
GAACGAAGCGGTCGACGAATTGAGAAGCCAGCTTAATGACAAGGAATCGCTGGTCGAATC
TACTGGCTCCGAGTTGCATTGCGCAAAGATCATGTTGGCAGAGAAGCAAGCAGNCATTGG
AGAAGTTGGAATGGGAGGCAAAGATGTCAAGTACAAAAGTCGAGGAACTTAAAGTGGATG
TAGCCTCTATGGATGTTGAAATCTCTGCTCT

Homology of Contig U35_9801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g33010.2	236	3e-61
Arabidopsis v10	None