barSeed - Barley Seed Development Database

Probe CUST_37489_PI390587928

Source Contig U35_9804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37489_PI390587928	Hv_44K_v2	AGCAGTACTGTGTACTTGTGTAGGGCAGGTGAACGTTGTAAATGATCAGTTATCGAGCGA	1207	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375441	2934	2e-24	2843 - 2902	100	60 / 60	plus	ABC00935 ABC26366
MLOC	AK357094	2980	2e-24	2907 - 2966	100	60 / 60	plus	ABC00935 ABC26366
MLOC	MLOC_63318.1	1879	7e-23	1712 - 1771	98	59 / 60	plus	ABC26366
JLOC1	JLOC1_41458.1	2977	4e-23	2907 - 2966	98	59 / 60	plus
Harvest21	ABC26366	1273	2e-22	5 - 66	97	60 / 62	minus	ABC26366
Harvest35	U35_9804	1304	3e-25	1208 - 1267	100	60 / 60	plus

Contig Sequence (1304 bp)

>U35_9804 1304 Hv_44K_v2
CCGTGTCAGTGGTTGTGCACCACCTCAAAAAAATTCCTTGGGCAGATTTACATCCCTGAC
ATCAATTGGGTACTTATGATTCTTTGCATTGCTGTGACTGCTGGATTTAAGAACCAAATC
CAGATCGGAAATGCATACGGCACAGCAGTTGTGATAGTTATGCTTGTAACGACGTTCCTC
ATGGTCCCAATAATGCTGCTAGTATGGAAGAGCCACTGGATCCTTGTTGTCACTTTTCTT
GTGCTCTCATTGATGGTGGAGTTTCCATATTTCATAGCCTGCATCAATAAGGTGGATGAA
GGTGGTTGGGTCCCACTTGCCGTTGCAATCACCTTCTTTATCATCATGTACGTGTGGCAT
TTCTGCACCGTGAAGCGCTATGAATTTGAGATGCACAGCAAGGTTTCCATGGCCTGGATT
CTAGGACTCGGGCCGAGCCTCGGTCTTGTTAGGGTTCCTGGGATCGGCTTCGTATATACC
GAGTTGGCAAGTGGTGTTCCACATATCTTCTCCCATTTCATCACCAACCTCCCTGCCATC
CACTCTGTTGTCGTCTTTGTGTGTGTCAAGTACCTTCCGGGTGTACACTGTCCCAGTTGA
AGAACGGTTTATCATGAAGAGGATTGGGCCAAAGAACTTTCACATGTTCCGCTGTGTCAC
GAGGTACGGGTACAAGGACATTCACAAGAAGCATGATGACTTCGAGAAGATGCTTCTTGA
CAGGCTCCTGATCTTTGTGAGACTTGAGAGCATGATGGATGGCTATTCTGATTCTGAGGA
CTTCACCATGTCGGAGCAAAAGGTCCAGAGATCCACCAATGCGTTGCTGATGAGCGAAAA
GGCTGGAAGCGACCTGAGCTACTCATCACATGATTCCTCCATTGTGCTGGCCAAGTCGCC
AACAGGGAACAACAGCCTAACAAGGTATTCCAGCCAAACATTCGGCGACGAACTGGAGTT
CCTCAACAGCTGCAAGGACGCGGGTGTCGTGCACATCCTCGGCAACACCATTGTCCGTGC
CCGCAGGGATTCAGGGATCATCAAGAGGATTGTTGTGGATCACCTGTATGCCTTCCTCAG
GAAGGTCTGTAGAGAACACAGCGTGATATTCAATGTTCCTCATGAAAGCCTTCTCAACGT
AGGCCAGATCTACTATATATGAACTATTTTTTTTCTTCTTCTGTTCTTTTGGTTCTGATT
CAGAGTGAGCAGTACTGTGTACTTGTGTAGGGCAGGTGAACGTTGTAAATGATCAGTTAT
CGAGCGAGCCTCGGGGTTTCTCCCCAAAAAAAGAGAAAAGGCCA

Homology of Contig U35_9804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g10550.1	583	0.0	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi3g17780.1	788	0.0
Arabidopsis v10	AT1G31120.1	796	1e-145	\| Symbols: KUP10 \| K+ uptake permease 10 \| chr1:11104375-11107361 REVERSE LENGTH=796