barSeed - Barley Seed Development Database

Probe CUST_37483_PI390587928

Source Contig U35_9810

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37483_PI390587928	Hv_44K_v2	GACTATATATAAATAGGTACCAGCACATATAGTTTATCAACAAGGTCTCCTGCCTGCTTG	471	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.314	0.332	0.423	1.959	2.562	4.522
Raw	6.502	10.874	14.495	103.431	47.149	91.175

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63750.1	602	2e-24	532 - 591	100	60 / 60	plus	ABC20677
MLOC	MLOC_63749.1	529	2e-24	459 - 518	100	60 / 60	plus	ABC20677
JLOC1	JLOC1_41794.1	1131	8e-25	971 - 1030	100	60 / 60	plus
Harvest21	ABC20677	529	3e-25	470 - 529	100	60 / 60	plus	ABC20677
Harvest21	ABC52010	473	1e-23	312 - 371	98	59 / 60	plus
Harvest35	U35_9810	531	3e-25	472 - 531	100	60 / 60	plus
Harvest35	U35_50016	473	1e-23	312 - 371	98	59 / 60	plus

Contig Sequence (531 bp)

>U35_9810 531 Hv_44K_v2
ATCACCCAGGAGGCGAGGCAGATCATCATCTCGGCCCCAACAGCCAAGGAGCTAGTCATG
AAGCTGGAGGAGTACGTCCCCGAGTACGAGGTCGGCCTTGTCTGGGATGACCAGAGCCAG
ATGCCAAGCAACACCCTGGTCCCGGAGCCGCTGGAGACTCCCGCAATCACATAGTCCTGA
TCAATGGGCGTCGCCTACATTTCAGTTAGGGTTCTAACAACAGTGTCCTAGATAAGACCT
AGCTGTGTGAAGGGCGAAGAGGGGGCACATTATAGCCTGTGTGCTTGTTTTGGTAGCGTC
GATCGACCGGTCTCTTGTGCCACCGCTGATGATTGTTTTGGGTGGCATGATTATATTAAA
TTAAAGTAACTAGTGAGTGGTAGCATCCAACTTGGATGGATTGTTGAATGGTTCATGGTT
GGATGGGCTAAGCCGCTGAATCGGTCCTGCTGTGATCCTGGAACAAGGGTTGACTATATA
TAAATAGGTACCAGCACATATAGTTTATCAACAAGGTCTCCTGCCTGCTTG

Homology of Contig U35_9810 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None