barSeed - Barley Seed Development Database

Probe CUST_37473_PI390587928

Source Contig U35_9821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37473_PI390587928	Hv_44K_v2	AGAGAGGTAGGTAGGTAAAGGTAGTAGGAGACGGACCCGGCCGCCGGCGACCATGGACTT	46	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.921	1.864	1.894	0.619	0.288	0.198
Raw	397.102	588.140	516.109	272.185	41.516	33.320

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16488.1	468	2e-24	124 - 183	100	60 / 60	minus	ABC19331
JLOC1	JLOC1_11354.1	578	8e-25	222 - 281	100	60 / 60	plus
Harvest21	ABC19331	380	3e-25	47 - 106	100	60 / 60	plus	ABC19331
Harvest35	U35_9821	380	3e-25	47 - 106	100	60 / 60	plus

Contig Sequence (380 bp)

>U35_9821 380 Hv_44K_v2
GCTCCACCAAAGATTTCAGAGACCGAGGCGGCGGGCCGAGGAGAGGAGAGAGGTAGGTAG
GTAAAGGTAGTAGGAGACGGACCCGGCCGCCGGCGACCATGGACTTCCACGCGCTCCCCC
GCCGCGACCTCCAGACCCTGGCCAAGCGCAACGGCGTACGCGCCAACCTCAGCAACGCCG
CCATCGCCGACGCCCTCGCCGCGCTCCCCGCGGTCGACGGGATCCAGGAGTACGTCGAGC
AGCCGGTCGCCGAAGTGGCCAAGCCGGCCGTTCAGGCGGTCGTGGAGGAGGTAAAGAAGA
AGAAGACCAAGAAGCAGGAGGCGGAGGAGAGGAAGAAGCAGGAAGCGGAGGCGGCCAAGA
AGAAGCAGGAGGAAAAAAAA

Homology of Contig U35_9821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None