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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37470_PI390587928Hv_44K_v2TTTATAACGGCTCCCGTCACATTATATTTGACGCGGATTTAGTATGTACGTACCAAAAAA685GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2791.5321.2310.8170.3170.359
Raw 426.071795.947557.581593.64679.07898.091



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_24788.15485e-22356 - 41010055 / 55plus
Harvest35U35_98247563e-25686 - 74510060 / 60plus



Contig Sequence (756 bp)

>U35_9824 756 Hv_44K_v2
CGAGCCATGAAGGATGGGAAAGATGCTCGTCAAAAAGTTTCTGATAATATGGAGCCAAGG
AAGAATTTGGTTGATGTAGGCAAAAACCAAGTTAAATCTGATGAGACTACTGAACACGCC
CTTCGATACAAGGCCAATGAAAGTAAGGATGAGAAAGGTGTTGTTGTAGAGGACAGGAAT
GCAAGTTTTGGATCTGATGCTAAGGAAAATATCCTGAACAGTCTTGAGGAGTCCTACACA
ATGACTCCATATAAAGATTCTGATGATGATGATTACGACGAACATGAACAAGAAGCAAGG
CGCAGAAGGAAATTTGTTCCTTCTTGGGCTCGGAAAGAAAACTTGGATAACATCTTACTA
TCCAACAAAACATTAAACCCTAGAGAAATTTTTGCACGGAAGCTGTCCTTCAACATACCT
GAAGTCCTTCCGGCGCCCGTTCCGCAGCGCGGCTTAAGATAGCCTTCCATTGCATTTGAT
GAAGTAGTGGCAATATGTCATTACCGTTGTTCTGCTGGCCTCCGTTTCGCCCTTGGCAGT
CAGTGATGTGTATAAGCTGACCAGCAGTCTCTCTATCTTTAGTAACCCGTAAGCTAGGAA
GAATGTTCTAGTATGTAGGAGAACATTGCTGTACCACTTGACTACTTACCTAGCATCGAT
CATTGCTCGGCAAACTTATTGTTTGTTTATAACGGCTCCCGTCACATTATATTTGACGCG
GATTTAGTATGTACGTACCAAAAAAAAAAAAAAAAA



Homology of Contig U35_9824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g33060.115335e-62
Arabidopsis v10None