barSeed - Barley Seed Development Database

Probe CUST_37455_PI390587928

Source Contig U35_9839

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37455_PI390587928	Hv_44K_v2	TTTGAATTGAGGCTACATCGAGCTCTAGCGTGATTGCAAGGAAGTGCTGTTATTTTCAAA	598	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.560	1.518	1.116	0.885	0.297	0.251
Raw	3083.803	4665.377	3034.937	3790.437	446.911	409.348

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60643.4	1451	9e-22	7 - 65	98	58 / 59	minus	ABC20128
JLOC1	JLOC1_39560.4	1589	5e-22	1408 - 1466	98	58 / 59	plus
JLOC1	JLOC1_39560.3	1274	5e-22	1093 - 1151	98	58 / 59	plus
Harvest21	ABC20128	672	3e-25	599 - 658	100	60 / 60	plus	ABC20128
Harvest35	U35_9839	672	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_9839 672 Hv_44K_v2
GGAAAGGTTGGGTTTCATGCTGGTGTTTGGTGATCTAGTTTTCATTCCTTTTACCTTCAC
TATTCAGGGTTGGTGGCTTCTGGGAAACAAAGTGGAGCTTCCACTTTTGGCTTCCGTTGC
TAACTGCTTCATTTTCCTTGTTGGTTATCTAGTGTTCAGAGGAGCCAACAAACAAAAACA
TTTGTTCAAGAAGGACCCTAAAGCTCCTATATGGGGTAAACCTCCCAAAGTTGTGGGGGG
AAAGCTGCTTGTGTCTGGCTACTGGGGCATTGCAAGGCACTGCAACTACCTTGGGGATCT
ACTCCTGGCACTCTCATTCAGCTTGCCTTGTGGAGCGAGCTCCGTGATCCCGTACTTCTA
CCCGACGTACCTGCTCATCCTGCTGATATGGAGGGAGAGAAGAGACGAGGCGAGGTGCGC
GGAGAAGTACAAGGACATCTGGGCAGAGTACTGCAAGCTCGTGCCCTGGAGGATCCTGCC
TTATGTGTACTGATTAGTTCAAGAATCAGAAGGCCATGTTGTATTGTTATTGTAGACTAT
AATGATCATGGAGAGCTAATTGGTAAGTTCTTCAGTACATTGTTCTTTGTCATCCAGTTT
TGAATTGAGGCTACATCGAGCTCTAGCGTGATTGCAAGGAAGTGCTGTTATTTTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_9839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39220.1	370	5e-99	protein\|delta14-sterol reductase, putative, expressed
Brachypodium v1_2	Bradi4g38370.1	373	1e-100
Arabidopsis v10	AT3G52940.1	369	2e-92	\| Symbols: FK, HYD2, ELL1 \| Ergosterol biosynthesis ERG4/ERG24 family \| chr3:19630369-19633112 REVERSE LENGTH=369