barSeed - Barley Seed Development Database

Probe CUST_3744_PI390587928

Source Contig U35_14371

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3744_PI390587928	Hv_44K_v2	TTTCCGGGATCATAATGAAATCTGTTGTCGTCGGTCGGTAAACACTCGACGAGAATGGAA	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363248	1111	2e-24	1029 - 1088	100	60 / 60	plus	ABC01356 ABC01357 ABC01358
MLOC	MLOC_53473.1	1376	2e-24	1181 - 1240	100	60 / 60	plus	ABC01356 ABC01357 ABC01358
JLOC1	JLOC1_34359.1	1371	8e-25	1200 - 1259	100	60 / 60	plus
Harvest21	ABC01357	1217	3e-25	1117 - 1176	100	60 / 60	plus	ABC01357
Harvest21	ABC01356	538	3e-25	39 - 98	100	60 / 60	minus	ABC01356
Harvest35	U35_14372	1218	3e-25	1117 - 1176	100	60 / 60	plus
Harvest35	U35_14371	538	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_14371 538 Hv_44K_v2
CGAGAAGCGGTCCTACACCGTCAAGGAAGGCGATGTCATCGTGGCGCCGGCGGGGTCGAT
CATGCACCTGGCTAACACCGACGGCCGGAGGAAGCTGGTCATCGCCAAGATCCTCCACAC
CATCTCCGTGCCCGGCAAGTTCCAGTTTTTGTCGGCCCTCGTCGAGGGGCGCCTCGGCGG
GGCGGGCCTTGACGTGTTCGAGGACGAGCCCAACGTGCCCGAGGCGCTGTTCGCGCTCGA
CAACGTCGTGCTGGTGCCCCACGTGGGGAGCGGGACGCACGAGACACGCCAGGCGATGGC
GGACCTTGTCCTGGGTAACCTGGAGGCGCATGTTCTGAAGAAGCCGCTGCTGACTCCGGT
TGTCTGATGATCTGATGATCAGGATGGGGCACTTTCGTGTGTTGTATATGAAGAACCGAA
GCACGGCAAAGATGTTTTCTTTTCCGGGATCATAATGAAATCTGTTGTCGTCGGTCGGTA
AACACTCGACGAGAATGGAAGGTTAATAAATTTGATTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14371 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None