barSeed - Barley Seed Development Database

Probe CUST_37448_PI390587928

Source Contig U35_9847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37448_PI390587928	Hv_44K_v2	CAGAAAAGTTTTGTAAGTTGCTACCCTTGTAATGAGACGATTTGCAGACAATAATTTGTG	541	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.026	1.624	1.315	0.735	0.283	0.220
Raw	6597.827	8361.103	5867.657	4996.013	694.554	595.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70473.1	1728	2e-24	41 - 100	100	60 / 60	minus	None
MLOC	MLOC_70473.2	1573	2e-24	20 - 79	100	60 / 60	minus	None
JLOC1	JLOC1_46769.1	2907	8e-25	2802 - 2861	100	60 / 60	plus
Harvest21	ABC20023	605	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_9847	605	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_9847 605 Hv_44K_v2
AAGAAGCTGGAGAAGGCGCGGCAGAAGGCGGACATTGTGGCGGACCAGAGCGACATCAAC
GAGCAGTCCAAGGCCAAGATGATCGACAAGATCTACCGCAAGGCAGTGTCGACGCAGCGG
CCCAAGAAGGAGTATGTGGTGGCCAAGAAGGGTGTCCAGGTCAGGACCGGCAAGGGCAAG
GTGCTGGTGGACCCGCGGATGAAGAAGGACAAGCGGAGCGCCGGGTCGGGGAAGAAGGGC
GGGAAAGGCAAAGGTGGCGCCGGCAAGGGGAAGAAGGGCGCCGGCGGCGGCAAAGGCGGT
GGGCAGAAGAAAGGCGGGAAGGCTGGTGGTGGTGGGAGGAAGGCCGCCGGCGGTGGCGGC
AAAGCGCCGCGTTGAGTAGTGTGACAAGAGGCATATGGATGCTGGGCATGTCGCCTGTTG
GATAGCTATCTCTCTGCTGCCGAAAGTTTTGCCTGTCTGGCTAGCCCGCAAGTCTAAGAT
TGCTAGCTGTTTTTGTTATGCTATATATACGTTGCTACTATTAGAGCTGTTTTCGGCCTG
TCAGAAAAGTTTTGTAAGTTGCTACCCTTGTAATGAGACGATTTGCAGACAATAATTTGT
GATTG

Homology of Contig U35_9847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None