barSeed - Barley Seed Development Database

Probe CUST_37444_PI390587928

Source Contig U35_2823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37444_PI390587928	Hv_44K_v2	AATGATAGGACAATTTCTCTGGACCTCAACCTATGTGTGGAATGAGGAATCTATAACCCT	1289	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73532.1	4810	2e-24	1819 - 1878	100	60 / 60	plus	ABC06416 ABC10511
MLOC	MLOC_73531.2	3543	2e-24	1459 - 1518	100	60 / 60	plus	ABC06416 ABC10511
JLOC1	JLOC1_48958.1	4807	8e-25	2933 - 2992	100	60 / 60	minus
JLOC1	JLOC1_48957.4	3934	8e-25	1393 - 1452	100	60 / 60	plus
JLOC1	JLOC1_48957.3	3945	8e-25	1404 - 1463	100	60 / 60	plus
JLOC1	JLOC1_48957.2	3961	8e-25	1420 - 1479	100	60 / 60	plus
JLOC1	JLOC1_48957.1	4008	8e-25	1467 - 1526	100	60 / 60	plus
Harvest21	ABC06417	1130	3e-25	900 - 959	100	60 / 60	plus
Harvest21	ABC06416	1569	2e-21	1290 - 1342	100	53 / 53	plus	ABC06416
Harvest35	U35_2823	1519	3e-25	1290 - 1349	100	60 / 60	plus
Harvest35	U35_2824	783	2e-21	504 - 556	100	53 / 53	plus

Contig Sequence (1519 bp)

>U35_2823 1519 Hv_44K_v2
GGTCTCTCGCCCTCGCTGCACACAGTGGCCACCAAGCTCAGCTCGAGCCCTCTCCGCCCT
ACTTCGCCGGCGTCCTTCCACCCCGCCGCCGGCCGCCCTAATGCTCCTCCCGACGCGCCG
CCTCCCCGCCGCTCCTTCCCGCCCAGCCGTGCGCCCGCACATCTCCCCCGCGCGGCCGTC
GCTCCGGTTCCGGCGACAGCATGGCCGAGCGGCGACGGCGAGGGCGGCGTCGGCGACACC
TCCCGTGCTTGGTGACACACTGCTGGGTCTGTACGAGAAGGAGAGGCTAGGCCTCTCACG
ATACGCCGACGAGGAGTCCAAAGAAGACGTCTTCTGGGAGACCTTGGACGCCGATTTGCA
GTACTGGACCAGATCCCTGCGCCCGGTGCAGTGGTATCCTGGCCATATTGCAAAAACAGA
GAAGGAACTGAAAGGGCAGCTAAAGCTCATGGATGTCGTCATAGAGGTCCGGGATGCTAG
AATTCCCTTGGCCACCACCCATCCTAAGATGGATTCCTGGCTAGGCAACCGGAGAAGGAT
CATAGTGATGAACCGCGAGGACATGGTGTCGGCCGACGACAGAAATGCATGGGCGACTTA
CTTTTCTAGTCAGGGTATCAAAGTTGTTTACTCAAATGGACAGCTGGGCATGGGTACGAT
GAAATTAGGAAGAATGGCGAAATCAGCAGCATCTACTGTGAACACAAAGCGAAGAGAAAA
GGGATTGCTTCCTCGTCCGGTTCGGGCTGGAATTGTTGGATATCCAAATGTTGGTAAATC
TTCCTTGATTAATCGCTTGCTAAAACGAAGAATGTGTCCAGCAGCACCTAGACCAGGTGT
CACAAGAGAACTGAAGTGGGTGCGTTTTGGGAAGGATCTAGAGCTGTTAGACTCTCCTGG
AATATTGCCAATGAGAATTAGTGATCAGACAGCTGCTCTTAAGCTTGCTATCTGTGATGA
TATCGGAGAAAGATCATATGATTTTGCTGATGTGGCAGCCATTCTTGTGCAGATATTGTT
AAGACATCCGGCTGTTGGTTCTGAGGCATTTCGAAAACGATACAAGATCGATGTAGACAG
TGACTGCGGCAAATTGTTTGTCACGAAGCTCTCAGTCCACTTGTTCAATGGAGATACCAC
CCAAGCAGCTTTCCGCATCTTGTCCGACTTCCGGAAAGGCAGATTTGGTTGGGTTGCCTT
GGAGAGACCTCCAACATGAACAATAAACACAACACTTTACCAGAGATCATACTCACGACG
CACGTTGATCACAATGTCCTTTGTAGCGCAATGATAGGACAATTTCTCTGGACCTCAACC
TATGTGTGGAATGAGGAATCTATAACCCTAAATCACAAGTCTGACGGCACATCGGAAACT
GCCATGTAGTTGCATGACTATCTAGAGGTCTGAGCTGGATATGTATTAGCATGTGAAAGT
TAGTCAACTCTATATTTGTAAGCTGTTACAGAATAAGTATGGATAAATGGAACTTATTCC
AATTCCGCACAATTAAATG

Homology of Contig U35_2823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35540.1	372	0.0	protein\|GTPase of unknown function domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g24370.1	377	0.0
Arabidopsis v10	AT4G02790.1	372	7e-161	GTP-binding family protein \| chr4:1247416-1249351 FORWARD LENGTH=372