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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37440_PI390587928Hv_44K_v2AGCCTGATACATTTCACTCGTCAGACGAAGCAACATCGTTGATTATTTTGTATCAAAAAA2490GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.3232.3041.0400.8380.3370.390
Raw 598.146925.334369.749485.55565.62783.474



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_21666.123909e-222292 - 234610055 / 55plus ABC07814 ABC43725
MLOCAK251924.124953e-212442 - 249510054 / 54plus ABC07814 ABC43725
JLOC1JLOC1_15024.210785e-22949 - 100310055 / 55plus
JLOC1JLOC1_15024.110595e-22930 - 98410055 / 55plus
Harvest21ABC437254393e-25369 - 42810060 / 60plusABC43725
Harvest35U35_282725613e-252491 - 255010060 / 60plus



Contig Sequence (2561 bp)

>U35_2827 2561 Hv_44K_v2
GGCTTCGGCCGACTACGACTCGACTCCCCAGCCCGGTAGAAACCCCGTCCAGAGTGCGCC
ACTTTCTCCAATCGTCCATCAGGAGAGATGGGGAGGCGCCGCCGGTTCACGCATCAGCCC
ACCAGCGACGACGACGACGAGGAAGACAGAGCCGCCCCGCAGCCGCTCAGAACTACCAAG
CCCACCGCCCCTCCCTCCTCGGGCGCCAAGAAGCAGCAGCGTCACCATGCCGACGAGGAC
GACCTGGAACTCCAGGAAGAGGAGGAGGATGAGAAAGACCTGGAGGAGATGCGGATGAAC
GAGGAGGAGGAGAGGCGGGAGGAGACGCAGACCCGCCGCCGAAGAGGGCGCAAACCCAAG
CGCCCCGCCGAGGAGAGCGACGAGGAGCCGGAGGAGAAAAATCCGGAATCAGAGGAGGAG
GAGGAGTCTCGCGAGGAGGATAGCACGGAGGCGGTACCCGTCGGTGAACCTTTGAAGGTG
ACCGGCAAGGGGAAGAAACAACGGAGGCATTACTTCTCCTTCGAGTACGAGGGCAACACC
TTCGAGCTTGAGGACCCGGTGCTGCTCACGCCCGAGCAGCAGAAAGAGAAGCCCTATGTC
GCCATCATCAAGGATATAACAGAAAATGATGGGAGCTTATCAGTAACTGGTCAGTGGTTT
TATAGGCCAGAAGAAGCTGACAAAAAGGGTGGTGGGAATTGGACAGCAAGTGACACAAGA
GAGCTATTTTATAGTTTTCATATAGATGATGTGCCAGCGGAGTCAGTTATGCACAAATGT
GTGGTCCATTTCATTCCACTAAACAAGCAGATTCCCAGTCGAAAGGAACACCCTGGATTC
ATTGTCCAAAAAGTTTATGACACAGTTGCGAAGAAATTGTGGAACTTAACAGATAAGGAT
TATGAGGATAACAAGCAACACGAAATCGATCTCCTCGTGAAGAAAACAGTGGACCGTATT
GGACAGCTTCCTGACCGTGAACCTATAGATGTACCTGCTGACAATACTGATCAGTTCTCA
AATAAACGTGGTCTACGAAAGAGACCTCCGAACCCTTTAGACGTGTCGAGAGATACAACA
GGCAAACCCGAGCAATTCATAAAAGCAGAGACACCTGGGAGTGATAATCTAAAGCATTAT
GCCATCCTCGCCAAATATAAAGCTGTCACTAACGCTACTTATCGCGATAAGTGGCTTGAT
AAACTAGTAGACACTATTCCATTAACATCAAAAGAAGGTGATGAGGCTTCTCATGCTGAT
GCTGGCAGTGTGGCCAACATTTCAAATAGCTCTTCATCTGCAAGGGATACTAGTTCCGGT
GATAATGAAAATTCATATGCACCAGATGTGGTTGTTTCAATAATGGCATCCTTAGAAAGG
TCTACATATGACGCTCTTCATGCTGACTTCCAGAAGTATAATCAGAAAATGAGAAAATTA
GAATTCAACATCAAGAATAGCCCTGTACTGCGCAGGCGACTGATGAACAAGGAGCTTGAC
CCTGCAGTTCTTTTAACCATGTCTCCAGATGAACTAAAGGCTGGGTTGACACCAGCAGAG
AAAACGTCTGAACCAGAAGAAGCAAGGCGATTGCAGATGACTGACGCACGATGTGAAAGG
TGCACAGAAAAAAGAGTAGGCATTTCTGATATTATTCATGCTGGTCATGGAGATCGATAC
CAGCTCGAATGTATTTCCTGTGGTTACACATGGTTTTCGTCAAGAGATGCCATCTCATCG
CTGACGGTCGATACTCCAAGTTCTGGTGGGAATGTCGGTACCGCTCCCTGGGCGACAGCA
AAGTTTGATGTCCTTCAGAAGCAGCTAGTGAGCCCTCGGGATCAGCCAGACAATAAGGCA
AGTGCTGATGCTCTCCAGAAGAACGCGGTGGCATCCATGCCTAAACTTGAGAAACAGAAA
TCATTCATCAAACCGAAGCCAGAGGAACCCTCTGCACCCACACTGGAGAAACAGAGGGCG
TTCACCAAGCCAAAGCCGGAGGAACCCTCTGCACCTTCAGCTAGTCGTGAGTGAATGATC
ATGGGCATTGCTATGTTTCAGAGATTGTACCCTGGCAGCTCTTAAACATGCCAACCTGCA
GTAAAGCATGAATAGGATGACAACACTTTCTTGTAGTCTAAGGTTGAGGCAGTTGCACAG
CGTGTGTGTGACCATCACTCGCGGAACTAGCTTCGCATGCGCAGGCTAAAACTTTCGTTA
AACTAGTTTCATACTTCTAGAAGCTACTTTTGATCTCACTCTTGTTACGGTTGGCACTAA
AAAACAGTGGGGGGCAAGTGGTTAGCTCTTGGTGATTTCTGTTCCGCCGTCGACGAGGCC
GAGGTTGGGGAGCAAGAGCCACCGTATTAGATGAAGTAGTCAAACATGCAAACACAGAGA
AGTAGAGAGGGGAACTATTTTATTAATGATTGATCTATGTTACAATAATTGCTCCTCGTC
TAAATATACAGGGAAACACTTTGTATCATAAGCCTGATACATTTCACTCGTCAGACGAAG
CAACATCGTTGATTATTTTGTATCAAAAAAAAAAAAAAAAA



Homology of Contig U35_2827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g34330.16450.0protein|BAH domain containing protein, expressed
Brachypodium v1_2Bradi2g40147.16760.0
Arabidopsis v10AT4G11560.15877e-159bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587