barSeed - Barley Seed Development Database

Probe CUST_3743_PI390587928

Source Contig U35_14372

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3743_PI390587928	Hv_44K_v2	CTGTTGTCGTCGGTCGGTAAACACTCGACGAGAATGGAAGGTTAATAAATTTGATTTCTT	1137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363248	1111	2e-24	1050 - 1109	100	60 / 60	plus	ABC01356 ABC01357 ABC01358
MLOC	MLOC_53473.1	1376	2e-24	1202 - 1261	100	60 / 60	plus	ABC01356 ABC01357 ABC01358
JLOC1	JLOC1_34359.1	1371	8e-25	1221 - 1280	100	60 / 60	plus
Harvest21	ABC01357	1217	3e-25	1138 - 1197	100	60 / 60	plus	ABC01357
Harvest21	ABC01356	538	3e-25	18 - 77	100	60 / 60	minus	ABC01356
Harvest35	U35_14372	1218	3e-25	1138 - 1197	100	60 / 60	plus
Harvest35	U35_14371	538	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (1218 bp)

>U35_14372 1218 Hv_44K_v2
ATTTCCCCACCAGTCGCTACCGCGGAGCAGCCCACCCACCACACAACAACCAGCCGCTGC
TGCCGCCCTCGGTGCCCCCGGCCGCCATGGCGATGGAGTCCCTGGGCGTGCTGCTGCTGC
ACCCCATGAACGCCTACCTGGAGCAGGAGCTCGACCGCCGCTTCCGCCTCTTCCGCTTGT
GGGACTCCCCTCCCGACGGCCGCGCCGAGTTCCTCCGCGCCAACGCCTCCGCCATCCGCG
CCGTCGTCGGCAACGCCGGCTACAACGCCGACGCCGCGCTCATCGACGCGCTGCCGTCGC
TCGAGATCGTCGCGTCCTTCTCCGTGGGGATCGACCGCGTCGACCTCCCCAAGTGCCGCG
AGCGCGGGATCCGCGTCACCAACACCCCCGACGTCCTCACCGACGACGTCGCCGACCTCG
CCGTCGGCCTCACCATCGCCGCGCTAAGGAAGATCCCGCAGGCCGACCGCTACGTGCGCG
CCGGCTTGTGGAAGGCAAAGGGCGACTACACACTCACCACGCGGTTCAGTGGCAAAAGAG
TGGGCATCATCGGGCTGGGCAGGATAGGGCTAGCCATTGCCACCCGAGTGGAGGCCTTTG
ATTGCCCTGTCAACTACTACCAGAGAACAAAGAAAGACTACCCCAACTACACCTATTACC
CCAGCGTGGTTGAACTGGCAGTAAACAGCGACATCCTGGTGGTGGCTTGCCCGCTGAACG
AGCAGACCCGGCACATCGTCAACCGCGAGGTGATCGAGGCGCTGGGGCCTAAGGGCGTGC
TCATAAACATCGGTCGCGGCCCTCACGTCGACGAGCCTGAGCTGGTCTCGGCCCTCGTCG
AGGGGCGCCTCGGCGGGGCGGGCCTTGACGTGTTCGAGGACGAGCCCAACGTGCCCGAGG
CGCTGTTCGCGCTCGACAACGTCGTGCTGGTGCCCCACGTGGGGAGCGGGACGCACGAGA
CACGCCAGGCGATGGCGGACCTTGTCCTGGGTAACCTGGAGGCGCATGTTCTGAAGAAGC
CGCTGCTGACTCCGGTTGTCTGATGATCTGATGATCAGGATGGGGCACTTTCGTGTGTTG
TATATGAAGAACCGAAGCACGGCAAAGATGTTTTCTTTTCCGGGATCATAATGAAATCTG
TTGTCGTCGGTCGGTAAACACTCGACGAGAATGGAAGGTTAATAAATTTGATTTCTTAAA
AAAAAAAAAAAAAAAAAA

Homology of Contig U35_14372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12830.1	317	1e-157	protein\|erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Brachypodium v1_2	Bradi2g07650.1	470	2e-141
Arabidopsis v10	AT1G79870.1	313	7e-126	D-isomer specific 2-hydroxyacid dehydrogenase family protein \| chr1:30044794-30045851 FORWARD LENGTH=313