barSeed - Barley Seed Development Database

Probe CUST_37435_PI390587928

Source Contig U35_2832

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37435_PI390587928	Hv_44K_v2	GCGAACCTCTGTACTATAACAGTGTAGGAACTAAGGAAGAACTTTATTCAAAACATTCAT	1088	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.991	5.463	1.151	0.927	0.869	0.774
Raw	64.586	70.120	12.548	16.131	3.607	3.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69701.1	1114	2e-24	1053 - 1112	100	60 / 60	plus	ABC06474
MLOC	MLOC_69701.2	1288	3e-21	1 - 54	100	54 / 54	minus	ABC06474
JLOC1	JLOC1_46206.1	1269	8e-25	1133 - 1192	100	60 / 60	plus
Harvest21	ABC27090	669	3e-25	578 - 637	100	60 / 60	plus
Harvest21	ABC06474	1188	3e-25	1089 - 1148	100	60 / 60	plus	ABC06474
Harvest35	U35_2832	1182	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_2832 1182 Hv_44K_v2
CAGAAAACAACCGCGCCCGCCAGCCACACAGTCCCAAGCAGCCAGCCAGTCGCCTCACTG
CTCCGCATTGCCCGGCGCGGGCCATGGCACTCCTGCTGCTGCGCGGCTGCCTCGCGCCGG
TCAACACCGCCGCCCTGCCGTTCCGGCGAAGGGAGACGACGAGCCGGCTTGGTTACCGCC
GGCCGTCCCGGTTTGGCGCGGTCGTCGCCTCGGCCGCCGCGGCCTCGCCGTCCGGAGGCG
ACGGCTCGACCGCCGCGGTGGACGCTGTGCTGCGTGGCTCGGAGGGTTCCAACGCCAAGG
CGCGCGACTACGGCGGGACCAACGGCGCCGTCGTCTCCGGGACCGCCAGGTCCACCTCCA
TCGAGACCACCGTCGAGAGGATCATCTTCGACTTCCGGTTCCTGGCTCTTCTCGCCGTCG
CCGGATCGCTGGCGGGCTCCCTCCTCTGCTTCCTCAACGGATGTGTGTACATAAAAGAGG
CCTATTGTGTCTACTGGACGAGCTGCGCCAAAGGTGTCCATACAGGGCAGATGGTCCTCA
AGGTCGTCGAGGCCATTGATGTGTATCTTGCTGGCACCGTCATGCTGATCTTCGGGATGG
GTCTCTACGGGCTGTTCATCAGCAACGCGTCCAACGATCTGCCTTCCGGATCCGACCGGG
CTCTGCAAGGATCGTCGCTGTTCGGGATGTTCGCTCTGAAGGAGAGGCCGAAGTGGATGA
AGATCACGTCCCTGGACGAGCTCAAGACCAAGGTTGGGCACGTCATCGTGATGATCCTGC
TGGTGAAGATGTTCGAGCGGAGCAAGATGGTGAAGATCACCACGGGGCTGGACCTGCTCA
GCTACTCGGTCTGCATCTTCCTCTCCTCGGCCTCCCTCTACATCCTGCATAACCTCCACC
GGCCCGAGCACGAGGAGTCGGTGATGCCCCACTTGTAGCTAAACCGTGCCAGCCGGTCAT
CAGACGCCATGGCCTCGTGGTGTTCATGTAGGTTGGTATCTGACCGATGCATCGATCGAC
CCTGATGTGCTGAGAGCAGAAGGGATCGATGCGCGGTGGTCGACCGGTTCATCGCAGAGA
CGAGCACGGCGAACCTCTGTACTATAACAGTGTAGGAACTAAGGAAGAACTTTATTCAAA
ACATTCATATAGCACAAAATCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2832 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46330.1	287	6e-117	protein\|uncharacterized UPF0114 domain containing protein, expressed
Brachypodium v1_2	Bradi1g19250.1	282	8e-123
Arabidopsis v10	AT5G13720.1	262	1e-93	Uncharacterised protein family (UPF0114) \| chr5:4427960-4429029 FORWARD LENGTH=262