barSeed - Barley Seed Development Database

Probe CUST_37431_PI390587928

Source Contig U35_2836

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37431_PI390587928	Hv_44K_v2	TGCTACCAGGTTGTGAATCTGCGATGATGGATATGTTAATGGAACATACTTCCTAAAAAA	1194	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23317.1	892	9e-22	562 - 616	100	55 / 55	plus	ABC04243 ABC08191
JLOC1	JLOC1_16114.1	737	5e-22	562 - 616	100	55 / 55	plus
Harvest21	ABC08191	1195	3e-25	1133 - 1192	100	60 / 60	plus	ABC08191
Harvest35	U35_2836	1257	3e-25	1195 - 1254	100	60 / 60	plus

Contig Sequence (1257 bp)

>U35_2836 1257 Hv_44K_v2
ACGCTCCCCAAATCCCCCACCCTAGCCTCGCTCGCCCCCAAGTCAAACAACAACAGACAA
CGCATTCCCTCGAACACCTAGCCGCCTCCCTCCATCTCCATCTCCATGGCCACCTCCGCC
CTCGCCACCCTCTCGGCCACCGCCGCCGCCGCGGGGGCCAGGCGCGCGCTCCTCTCGCGC
GGCCCCTCCTCCTCCCTCTCCTTCTCCGCCCGCCGCCTCGCGCCCCTCCGCGCCGGGCCC
CTGCCCCGCGCGGCGACGCGGGCCGTCTCCGCGACCGCGTCCCCGGCCGCCGCGACGGCC
ATCGCGGTCGGCGACCGGCTCCCGGACGCGACGCTCTCCTACTTCGACTCCCCCGACGGC
GAGCTGAAGACGGTGACGGTCCGCGATCTCACCGCGGGGAAGAAGGTGGTCCTCTTCGCG
GTCCCAGGCGCCTTCACGCCCACCTGCACCCAGAAGCACCTCCCGGGGTTCGTGGCCAGG
GCCGGGGAGCTGCGCGCCAAGGGGGTGGACACCGTCGCCTGCGTCTCCGTCAACGACGCC
TTCGTGATGCGCGCGTGGAAGGAGAGCCTCGGCGTCGGCGACGAGGTGCTGCTCCTGTCG
GACGGCAACGGCGAGCTGACCCGCGCCATGGGCGTGGAGCTGGACCTGTCGGACAAGCCT
GTGGGGCTCGGCGTCCGGTCGCGCCGCTACGCGCTGCTCGCCGACGACGGCGTCGTCAAG
GTGCTCAACCTCGAGGAAGGCGGCGCCTTCACCAACAGCAGCGCCGAGGACATGCTCAAG
GCGCTCTGAGGCCTGAGCCGCGACACCCCTCCGCCCTCGCCATGCCCGTCGAGTCATCGC
CATCGGCTCGGTTCGTCCTCTGTTTCCTGATGAAGGCCTTTTTTGCTTCGTTTTTCCCTG
AATAATAATAATCGGTGCGGCAGCGGCGGACTGTCTTTGCTGCTGCTGCTGCTGTCACCT
CGATGTGCGGTGGCGAGTACTGAGTAGTGCAGCGTAGCTTTGCGAAGTTTCTGGAGAACT
ATGAATCTGTCGTGGCCGTGTCCTGGTTTGCAACCTGGCATGGAATGGAATGTCAACTTG
TGCTTGTTGTTTGCATCGTACCATAATGATTCGTATTCGTGATGGCACGGCTGTAGTACC
TACCGTGGCTCCGTTTATATGCAGGAAAATTAAGGTTGTGATGCGCACCAGCGTTGCTAC
CAGGTTGTGAATCTGCGATGATGGATATGTTAATGGAACATACTTCCTAAAAAAAAA

Homology of Contig U35_2836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g42000.1	233	4e-99	protein\|peroxiredoxin, putative, expressed
Brachypodium v1_2	Bradi1g35660.1	231	3e-102
Arabidopsis v10	AT3G52960.1	234	2e-85	Thioredoxin superfamily protein \| chr3:19639699-19640403 FORWARD LENGTH=234