barSeed - Barley Seed Development Database

Probe CUST_37430_PI390587928

Source Contig U35_2837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37430_PI390587928	Hv_44K_v2	TGAGATTCAGAGCGCTCGTGGAATTGTGGATGTGCTGGATGAGATGTTAAATGCACTTGA	862	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368118	2507	2e-24	963 - 1022	100	60 / 60	plus	ABC07314
MLOC	AK249571.1	2466	2e-24	847 - 906	100	60 / 60	plus	ABC07314
MLOC	MLOC_36453.1	658	2e-24	582 - 641	100	60 / 60	plus	None
JLOC1	JLOC1_23470.1	867	8e-25	583 - 642	100	60 / 60	plus
Harvest21	ABC07313	1351	3e-25	863 - 922	100	60 / 60	plus
Harvest35	U35_2837	1351	3e-25	863 - 922	100	60 / 60	plus

Contig Sequence (1351 bp)

>U35_2837 1351 Hv_44K_v2
CTCCCCCACCTCGCCAACCCCAATCCCAAACCAGTCTGACTCTGACCAGCCCTTCCTACC
AAGAACACATCCAATCCCACACCAGTCCGCTCTAAATCCCGATCCGCCCCCACCAATCCC
ACGAACGAACTCCCCGGGGGCCCCTCTCGTCCTGGCACGAGCGCGTCGGCCCCATCGCCC
CGGATCGGAGCAGAGGCGGCTCCGGCGCTGAATCTCCCTTCAGATTCGGATTTAGGGTTT
TTGGACGTGGTCGGTGGTGGTCGTGGGCTTGCGCGGCCGGTTTGGAAATGTCGGCGGCCG
TGGCGTGCGCAGAGCGGGCGACGAGCGACATGCTGATCGGCCCCGACTGGGCCGTCAACA
TCGAGCTCTGCGACATCATCAACATGGATCCCGGACAAGCAAAGGATGCACTTAAGCTCC
TAAAGAAGCGCCTTGGGAATAAGAATTCAAAAGTGCAAATTCTGGCCCTTTATGTGCTAG
AGACTCTAAGCAAAAATTGCGGGGATATTGTTTACCAACAGATCATTGAGCGTGATATAC
TAAGCGAAATGGTCAAGATAGTAAAGAAAAAGCCAGACTTAAATGTGCGGGAGAAAATAT
TGAGTCTGATTGACACATGGCAAGTAGCTTTTGGAGGTCCTTCCGGGAGATATCCCCAGT
ATCACACTGCGTACCAAGAACTCAGGGCGGCTGGTGTTGATTTTCCACCTCGTGAGGAGA
ATACAGTTCCACTTTTTACACCTCCTCAGACTCAACCTTTGAGGCAGCCACATTTATATC
CTCCAGGTCAAAGTTATGAAGATGTAGCTATACAAGCTTCTCTCCAATCTAGTACCCCTG
CTGCACCTCCCCTGAGTCTAAGTGAGATTCAGAGCGCTCGTGGAATTGTGGATGTGCTGG
ATGAGATGTTAAATGCACTTGACCACAGACACCCCGAGGGTGTGAGAGAGGAGGTCATTG
TTGACCTTGTTGGGCAGTGTCGATCTTACCATGCTCGTGTGATGGATCTTGTTAGCGATA
CTGGTGATGAGAGCCTTCTGTTTCAGGCTCTAGGACTAAATGATGAGTTGCAGCGTGTTC
TTCAGCGTCATGATGACATAGCAAAAGGAGTTCCTCCAAACATACCAGTGCCTGTTGCTG
GTAATGTAAACCAAGGGGCAGCCCCTCCTCGGCCTGCCGGGGTGTCATTTTCCCCTCTTC
TTAATGTACACCATGAGGACGATGAACCAGAAGATGAGTTCTCTGTGCTTTCTCGCAGGT
CTGCACGGGACGCCGCAGCAGCACAGGGCAACATGTCTTCTGTTCCGAGAAATGAAAGGC
CATACCCGAGCCCACTTCTTCCCCCACCACC

Homology of Contig U35_2837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g09329.1	589	0.0	protein\|VHS and GAT domain containing protein, expressed
Brachypodium v1_2	Bradi4g23190.1	580	0.0
Arabidopsis v10	AT1G21380.1	506	1e-107	Target of Myb protein 1 \| chr1:7485806-7488032 REVERSE LENGTH=506