barSeed - Barley Seed Development Database

Probe CUST_3742_PI390587928

Source Contig U35_14373

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3742_PI390587928	Hv_44K_v2	TCTAGCGGGTTATTGTTTTTGAAAGACATCAATGTTATGTCTGTTATGCAATCAACAACC	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53473.2	1120	2e-24	1035 - 1094	100	60 / 60	plus	ABC01357 ABC01358
Harvest21	ABC01358	1157	3e-25	33 - 92	100	60 / 60	minus	ABC01358
Harvest35	U35_14373	711	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_14373 711 Hv_44K_v2
GTACACACTCACCACGCGGTTCAGTGGCAAAAGAGTTGCTATTCTTGGGCTTGGCAGGAT
AGGCTTAGCCGTAGCAAAAAGAGCTGAAGCTTTTGGTTGCTCAATCAGTTATCATTCAAG
ATCTGAGAAGCCATTTCCAAACTACAAGTTCTTTACAAATGTTGTTGACCTGGCATCCAA
TTGTGACGTGCTTATTGTAGCATGTTCGCTTAGTGCTGAGACCAATCACATTGTTAATCG
TAAGGTCATGGATGCACTAGGACCAGATGGTGTGCTCATAAACATCGGGCGTGGAGCACA
CGTGGATGAACCTGAGCTTGTGTCTGCTCTTCTTGAGAAGCGCCTTGGAGCAGCAGGCCT
TGATGTGTTTGAGCACGAGCCCTTTGCTCCAGAGCAACTTTTCAGTTTAGATAATGTTGT
TTTGGTCCCTCATGTGGGAAGTGATACTGAAGAAACATGCATGGCAATGGCTGACCTGGT
TCTAAAGAATCTAGAGGCACATGCTCTTAATAAGCCCTTACTCACCCCAGTCATCTGATT
GTTACTGGGATGCCCAGATGTTAGCAGTTTGTAATCCAAACTCGAGTTTTTTTATGTCTA
GTTTATCAACCCAGCATTATCTAGCGGGTTATTGTTTTTGAAAGACATCAATGTTATGTC
TGTTATGCAATCAACAACCATGATAAATAAGATCACCAGTTTTGGAAAAAA

Homology of Contig U35_14373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12830.2	317	5e-107	protein\|erythronate-4-phosphate dehydrogenase domain containing protein, expressed
Brachypodium v1_2	Bradi2g07650.1	470	5e-98
Arabidopsis v10	AT1G79870.1	313	2e-75	D-isomer specific 2-hydroxyacid dehydrogenase family protein \| chr1:30044794-30045851 FORWARD LENGTH=313