barSeed - Barley Seed Development Database

Probe CUST_37429_PI390587928

Source Contig U35_2838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37429_PI390587928	Hv_44K_v2	CAAGCTCCTTGCAACTAAATTATGGTGCCGTTTGAACTTCCGTTCTTAAATATAACTTTT	2389	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.762	1.618	1.056	0.740	0.317	0.252
Raw	304.110	426.679	246.297	271.161	41.324	35.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45556.2	1708	8e-25	1627 - 1686	100	60 / 60	plus
JLOC1	JLOC1_45556.1	2103	8e-25	2022 - 2081	100	60 / 60	plus
Harvest21	ABC07314	2478	3e-25	2390 - 2449	100	60 / 60	plus	ABC07314
Harvest35	U35_2838	2478	3e-25	2390 - 2449	100	60 / 60	plus

Contig Sequence (2478 bp)

>U35_2838 2478 Hv_44K_v2
GTGCGATTACCACGATGTACTACACCATGAGATGCCTGAGATAACATACCTGAATCCGTT
ACATGTTAATGCTATGCTATTATGTGTCATGCATGTCAATAAATGAGATCACCTATGATA
CTAGTTTATGATACTATGCAGTATAAAGGTAGTATCATACAATAGTATCATATGCATGAT
GCTACTATATGTTACTCCCCACTATGATCAGCCTAACTCAGTTGTTTCCTGCAAGTTTAG
ATGATTTAAAGTATCCCATTTTGACGGAATTGAAACATTCTTAACATCATACCATGTCCA
AGACACATGAAGGCACATGAGCGTTAATTCACCCACCAGGATTTGACTTGCATTAATGGA
ATTATTTCGTGATTGTAATGGTGCCTCCCTTAAAGTGTTACAAAGTTTGATGATAGAAAG
GAGAACCATAGTGACATAATAATCTTCTGGAAATTGAGTTATTCTATTTACATTATGCTT
GCCTTGAGCTACTTGTACTTGACGTTTTGGCCTTGTTGTTTTTTAAAGACAACAAACTGA
TATTCTTAGAAAAGTAGTAGAACTTATATTGGTGTATGCCCTTTTGCTTCTCCGTTTAAC
TGATGTCATTCATGTGATGGTGCTGTTTACTGTAAATATTAATTTGATTGCTTCATGCTA
TAGGGTGTGAGAGAGGAGGTTCATTGTTGACCTTGTTGGGCAGTGTCGAATCTTTACCAT
GCTTCGTGTGATGGATCTTGTTAGCGATACTGGGTATGCATCTTTTCACTCTGCCTTTCG
GTTCTGTGCTTTTTGCATTGTCATGTGACAGGACTTCATGTATTCCCTTGATGAGAGCCT
TCTGTTTCAGGCTCTAGGACTAAATGATGAGTTGCAGCGTGTTCTTCAGCGTCATGATGA
CATAGCAAAAGGAGTTCCTCCAAACATACCAGTGCCTGTTGCTGGTAATGTAAACCAAGG
GGCAGCCCCTCCTCGGCCTGCCGGGGTGTCATTTTCCCCTCTTCTTAATGTACACCATGA
GGACGATGAACCAGAAGATGAGTTCTCTGTGCTTTCTCGCAGGTAAGCTATATTTGTTTT
TTCCCATTACATTTGACTCTCATCTTTTCATGCTTATTGGTGTTCCATGCTTTGGATAGT
TTCTGCAACCTCAATTCGTATTATCGTTTTCTCAAATTGCGCTCCTCATGACTAAAATTG
TAGGTCTGCACGGGACGCCGCAGCAGCACAGGGCAACATGTCTTCTGTTCCGAGAAATGA
AAGGCCATACCCGAGCCCACTTCTTCCCCCACCACCATCGACAAAAAGGCCTGTTTACAC
AGAGGCAAGCAGTGTCGACTATCTAAGTGGAGACTCCTACAAATCGGAAAAAGTACCAGA
TGATTTTGTCAACCCAACAGCCCCCGCAAATATATCTGCACCATCTTATTCAAAAACAGA
GACGGATCACGAGCCAAAATATGATAGCAGGTCAGAATATGTGCCTGATGACTTCATAAA
CCCAACTGCAGCACCCAGTTTTTCCATGCCCTCTCGCCCTACGAGTGAGCCGAATAATTC
ATCTGTGAATAAGCTTGAGAGCCTTCCTGATGATGACTTCATAAACCCCACTGCACTTCC
TGGCTTTTCTTCGTCTTCAACTAGTGAAGATCTTCCAAAAGCTCCATGGGAAGCGCAAGC
TCCAGTTTCCCTACCACCGCCTCCTGCAAGGCATGGCCAAAGACAACAGTTCTTTGAGCA
ACAGCATGGCTTTCCTGGTGGGAACAATGAAGGTGGCTATGATGAAATGCTGACGCAGAC
AGGAAGCCTTTCTCTTAATCAAAGGAACACTGAGAATGGGAAGAGTGCATCGGTGTCGAC
TGCATCCCGCCAGCCCAAACATGAGGATGCCCTTTTTAAGGATCTTGTTGATTTTGCCAA
GAAGAATCCGTCTTCTCCATCTAAACCAGCCAACAGCCGCAGGACTCGCTGAGTGATGAG
TGTTCCAGTCATGTAACACACATAATTGAGTTGCCGGCCTGCTGGTTTTGCTACAGGCTA
GCGAATTAGATATACCGTCAAATAAGAGGGTTCGGAGTTTGGACTGTTTCACATCACAAC
ATTGGCAGTTATTTGATTTGCGCATTGGACAATTAAAATCACAGGTTCAGATACATAGTC
ATGATACTGGGTGTGGTGTGTAGTGAGCTGCCTTTCACCTTTTTCTTGTGTGGTATTGGT
TATCGATTCTGGCTTTATTTTGCTTAGCTGTATATATTTCTCCATTTGACAGCAGTATTC
TATTCATAGTTGAGTTTACGATTGATCTTGTAAGACTTAGTTAACAGTTTATTTTCAACG
TGGACGCTCCCATTTGTTCTTGTAAAAAAAAAAAAACTTGGCTAGAATTCAAGCTCCTTG
CAACTAAATTATGGTGCCGTTTGAACTTCCGTTCTTAAATATAACTTTTTTTAGAGTTTT
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_2838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g09329.1	589	3e-158	protein\|VHS and GAT domain containing protein, expressed
Brachypodium v1_2	Bradi4g23190.1	580	0.0
Arabidopsis v10	None