barSeed - Barley Seed Development Database

Probe CUST_37428_PI390587928

Source Contig U35_2839

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37428_PI390587928	Hv_44K_v2	CATGCGCATGCAACCATGGATAACTATGATTCTGATGATGATTTACTTGGATTTGAATTA	887	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.970	3.227	1.582	0.875	0.296	0.649
Raw	23.073	115.282	49.368	46.687	4.262	12.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80571.1	1164	2e-24	27 - 86	100	60 / 60	minus	ABC09047 ABC09048
MLOC	MLOC_80571.2	1373	2e-24	18 - 77	100	60 / 60	minus	ABC09047 ABC09048
MLOC	MLOC_80571.3	1253	2e-24	18 - 77	100	60 / 60	minus	ABC09047 ABC09048
JLOC1	JLOC1_53650.1	1086	8e-25	901 - 960	100	60 / 60	plus
Harvest21	ABC09048	324	3e-25	40 - 99	100	60 / 60	minus	ABC09048
Harvest21	ABC09047	963	3e-25	888 - 947	100	60 / 60	plus	ABC09047
Harvest35	U35_2839	986	3e-25	888 - 947	100	60 / 60	plus

Contig Sequence (986 bp)

>U35_2839 986 Hv_44K_v2
TAGTTCTAGATCCCGTGCGCCCACGCCTCGCTAGATCGCACCCACCTACCCCTGCCCCCA
TCGTCTGCTCGCTACGTGCCATCCGTCCGTCGATACACATACCATGGCCGTGTCGGAGCT
GGAGGTCGACGGCGTCGTCTTCCCGCCGCTCGCCCGCCCGCCGGGCTCCGCCCACGCCCA
CTTCCTCGCCGGCGCAGGCGTGCGCGGGATGGAGATCGGCGGCCACTTCATCAAGTTCAC
GGCCATCGGCGTGTACCTGCAGGCCGACGCCGCCGTCTCCGCGCTCGCCGCCAAGTGGGC
CGGCAAGCCCGCCGCCGATCTCGCCTCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGG
CGAGTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGCTGACGGGCGCGCAGTACTC
GGACAAGGTGACGGAGAACTGTGTCGCGTACTGGAAGGCCGCCGGCGTGTACACGGACGC
CGAGGCCGCCGCCGTCGACAAGTTCAAGGAGGCCTTCGGGCCCCACAGCTTCGCCCCCGG
CGCCTCCATACTCTTCACGCACTCCCCCGCCGGCGTGCTCACCGTCGCCTTCTCCAAGGA
CTCGTCGGTGCCGGAGTCCGGCGGCGTGGCCATCGAGAACGCCAGGCTCTGCGAGGCCGT
GCTGGAGTCCATCATCGGCGAGCACGGGGTGTCGCCGGCGGCCAAGCTCAGCCTGGCCAA
CAGGGTCGCTGAGCTGCTGAAGGGGGCCGCACACGCCGGCGGCGAGCCGGCCGCGGAGCC
CGTGCCGGTTTCGGTGTGAACGAACCGGCCGGGGCAATGCGGCGCCGTCACTGGTTGCTC
GCGTCGTGTGGCTGGTAGTGTCCGTGGTGGGACGTCGTGTTTTCTTCCATGCGCATGCAA
CCATGGATAACTATGATTCTGATGATGATTTACTTGGATTTGAATTAATAAAGAAGTATG
CCGTTCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60509.2	234	5e-106	protein\|expressed protein
Brachypodium v1_2	Bradi1g03840.1	223	7e-115
Arabidopsis v10	AT3G55120.1	246	4e-69	\| Symbols: TT5, A11, CFI \| Chalcone-flavanone isomerase family protein \| chr3:20430248-20431415 REVERSE LENGTH=246