- Probe CUST_3741_PI390587928
- Source Contig U35_14374
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3741_PI390587928 | Hv_44K_v2 | ATAAACCATATCCATTAGCCGCCATGGATCACCATCGGCACATGTTACTTATGTACACTC | 491 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.020 | 0.112 | 1.500 | 2.909 | 1.409 | 1.486 |
| Raw | 6.389 | 56.763 | 788.814 | 2177.310 | 428.930 | 483.716 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52281.1 | 589 | 2e-24 | 192 - 251 | 100 | 60 / 60 | minus | ABC01420 |
| JLOC1 | JLOC1_33487.1 | 839 | 8e-25 | 440 - 499 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01420 | 584 | 3e-25 | 34 - 93 | 100 | 60 / 60 | minus | ABC01420 |
| Harvest35 | U35_14374 | 584 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus |
Contig Sequence (584 bp)
>U35_14374 584 Hv_44K_v2 TCATCATCAAGCTTGGTCTCATTTACAAGGTCCCCAGCAGTGTGCATGAGTGAGCAAAAG GCGCCAAGCTGGAGAAATTCTGCCTGTTGTCGTCGGCGGCGGCGGCGCCGGTGCAGAACG TCGAGGCGACCAAGGCGGCGGCGAGGGCCGGAGGCGGCCCCGCGCGCCGAAACAGGGTGG AGGACGTCGTGAAGCGCGTGGACGAGGAGGAGGAGTGCATCGAGGAGATGATCAGGGAGC TCACCCACTACGGCTCCGTCGAGATCGTCCTCCCCTCCGCCTGCTCCAGCTCCGTCGTCT AGCTCGCTCTAGCCTGCCTGCCGGCCGTCCTCCAGCAAGAACCGACCGCTCCCCTAGCTA GCTAGCCAGCCAGCCAGTCCATCATCCATCCATGTCCATGCCCATCCACCCCCTTCGTCT CTCTCTCCCGACTTGTTTTTGTTAGGCAACAAACATGTAGCAGTAAGGTAAAGTAGTAAA TGTACACCCCCATAAACCATATCCATTAGCCGCCATGGATCACCATCGGCACATGTTACT TATGTACACTCCGTTAGCCGGAGGAGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_14374 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |