barSeed - Barley Seed Development Database

Probe CUST_37418_PI390587928

Source Contig U35_2849

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37418_PI390587928	Hv_44K_v2	GTGGAATCCAAAAGTGTGCTCTTGCAAGAGGAATATCATCGCTAACTTTCGCCCAAAAAA	1441	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369170	1612	3e-21	1559 - 1612	100	54 / 54	plus	ABC07503
JLOC1	JLOC1_24705.1	1237	5e-22	1168 - 1222	100	55 / 55	plus
Harvest35	U35_2849	1512	3e-25	1442 - 1501	100	60 / 60	plus

Contig Sequence (1512 bp)

>U35_2849 1512 Hv_44K_v2
CTTGGCCACCAGCCGTCCTGAATCGAGACCGAGACCGAGACCGCGCCCGAGCGCCCCGCC
GTGTCCGCTGCCGCGCCGCCGCCGCCATGCCGCCGTCCGTCCGCACGGTCTCCATCCCCT
TCGCCGACCTCAAGGAGCGGGACAGGGACCTGAGCGGCAAGATCGAGGAGGGGCTCGGCC
CCAACGGCCTCGGCATCATCTCCATTTCCGACGTGCCGGATTTCCCAGCTCTGAGGAGAA
CGCTCCTGCGCTTGGCGCCGAGAGTTGCAAACCTTCCTGAAGATGTGAAGAAAGAGCTTG
AAGACCCGGACAGCAGGTATAATTTTGGGTGGAGCCATGGGAAAGAGAAACTTGAATCTG
GGAAACTCGACACATTCAAAGGCTCCTATTATGCCAACCCAATTTTGGATGTCCCTACTA
CTGATGATGTCCTTGTAAGTAGGTACCCATCATACTGCCGACCAAATATATGGCCAGCTG
ATCATCTTCCTGAGCTTGAAATAGCATTTAAAGCTCTTGGAAAGCTAATGTTGGAAGTTG
GCTTGATGTTGGCTCGTCATTGTGATCTCTATGTAATGCAGCACGGAGTGGGACAATATG
ATGGTGAAAGTCTTGAGCAGACGATTTCCCGTTCAAGGTGTCACAAGGGGCGTCTGCTGT
ACTATTTCCCCAGACAATTCAGCGCACAAAAAGAAGGTGGTGATTCTGTTTCATCGTGGT
GTGGATGGCATACTGACCATGGGTCTTTAACAGGACTTACATGTGGCCTGTTTATGAAAA
ATTCAGTGGAGGTCCCCTGTCCTGATAGTGCAGCTGGGCTGTACATCCGGACACGTGATA
ACCGAGTTGTTAAGGTTACATTTGGGGAGGAAGAATTAGCTTATCAAATTGGTGAAACTA
CTGAAATACTATCAAGAGGTCGTCTATGTGCAACTCCACACTGTGTGCAGGCACCCAGCA
GTGAGAATGCTTCAAATGTTGAGCGCTCTACTTTTGCAATGTTCATGCAACCAGATTGGA
ATGAGACGCTTAACTTTCCAAGTGAAATTCCTTACCACCAAGAGTTGATTCCACCAAACG
GAGCGCTTACGTTTGGAGAGTACTCAGAGAGACTGGTGAACAAGTATTACGAGGGGAAGA
CATGATTCACGTGGATTGCTACGATGAGGCGTGGAGAAATGGCCCCAATGAAGACATAGT
GCTACTAGGAAACTAAAATCTTTAGCTAGTCGTGCCTGCAAATACACTTCCAAGTTCCTA
GAAAGCATAAAAAGATTTATAGGTATTCTAAATTACATAATTTCCGTACCGTGTGCGTTT
GTAAAAAAGATGCAAAAAGATGACCTGTTGAAAACTGTATAAAATAACATGAAATTAGTG
TACATGTAGTTTTTGTTATAGTCCTAATTTGTGTATGCAATGCTCTATTTTTGGCAAACT
TGTGGAATCCAAAAGTGTGCTCTTGCAAGAGGAATATCATCGCTAACTTTCGCCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_2849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48230.1	405	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g17170.1	394	0.0
Arabidopsis v10	AT4G13400.1	357	1e-161	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr4:7787822-7791149 REVERSE LENGTH=357