barSeed - Barley Seed Development Database

Probe CUST_37409_PI390587928

Source Contig U35_2858

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37409_PI390587928	Hv_44K_v2	TGTCGCACCGTTGGAAAATAGTTAGCTCGCGATGTGCACCGCAATGTTTTTATCAAAAAA	1346	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.421	1.511	1.061	0.848	0.354	0.380
Raw	4669.940	7692.787	4802.723	6095.773	880.091	1024.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371401	1669	3e-21	1576 - 1629	100	54 / 54	plus	ABC06808
MLOC	MLOC_12725.1	1330	3e-21	1249 - 1302	100	54 / 54	plus	ABC06808
JLOC1	JLOC1_8549.1	1398	2e-21	1250 - 1303	100	54 / 54	plus
Harvest21	ABC06808	587	3e-25	12 - 71	100	60 / 60	minus	ABC06808
Harvest21	ABC06809	1401	6e-22	1334 - 1393	97	58 / 60	plus
Harvest35	U35_2858	1416	3e-25	1347 - 1406	100	60 / 60	plus

Contig Sequence (1416 bp)

>U35_2858 1416 Hv_44K_v2
GCGCGCTGCCCGACCGGCGCCCGGGCTGGTGATGCCCTCGAAGATGAAGACGGAGGCGGA
GGAGAGCGAGCAGGCCGACGGCGCGGCGGCGGCGGCGGTGGTGGAGGAGGTGGTGCAGCC
GGTGGTGCGCGGCTTCGTCAAGGACTGGGACGCCATGGAGGACCTGCTCAGCTACGTCCT
CTACAGGAACATTGGGTGGGAGATGGGGGACGAGGGCCAGATCCTCTTCACCGAGCCGCT
CTTCACGCCCAAGGCTCTCCGGGAGCAATTAGTGCAACTTATGTTCGAAAAATTCAACGT
ATCAGGATTTTATGATTCTGAACAGGCTGTCCTGTCCCTTTATGCTGTTGGCCGCATTTC
GGGTTGTACGGTTGACATTGGACATGGGAAAATAGATATTGCTCCAGTTTGTGAAGGTGC
TGTTCAACACGTAGCATCGAAGAGATTTGAGATTGGAGGAACTGACTTGACAAACCTATT
TGCGCAAGAGCTAAAGAAGTCCAACCCATCAGTAAACATTGATATCTCTGATGTTGAGAG
GCTGAAAGAGCAGTATGCATGCTGCACAGAAGATCAGTTAGCCTTTGAAGCTATAGCGAG
CACATGCCAGCCAGAAACTCACACTCTTCCAGATGGACAGGTTATAACAATTGAAAAAGA
GCGCTATATAGTTGGTGAAGCTTTGTTTCAACCAAGTATCTTGGGCTTAGAAGATTATGG
TATTGTCCACCAGCTAATTACTAGTGTTTCAAACGTCGCATCGGAGTACCAAAAGCAACT
GCTTGAGAACACTATGTTATGTGGTGGCACTGCATCTATGACTGGTTTCGAGGACAGGTT
TCAGAGAGAAGCAAATCTGTCTGCTTCAGCGATCCGCCCTACTCTTGTGAAGGCGCCGGA
GTACATGCCGGAGGACCTGGCGCGGCACTCGGCGTGGCTGGGCGGCGCGATCCTGGCCAA
GGTGGTCTTCCCCCAGAACCAGCACGTCACCAAGGGCGACTACGACGAGACCGGCCCGTC
CATCGTCCACAAGAAGTGCTTCTGACCGAGAACGAACCGCAGGCGCGTACGTACGCTCGG
ACCAGCAAAGCTCTACTGCGTGTAGGGGCCGGCGGCACTGGCACTGGTGTGGTGTGGTGT
CCTTCCTCGTCTTATGCTGGGCGTCTCTGAGAGAGAGAGAGAGAGGGGCTATTCATGGCC
TCTGGCTATGGTTTAGACGTGTCGTTGCTACCTAGCTTACCTAGCTATCCATTCGCAGAT
TGAGTAGGATCTAAGATTGGCGTCTATTTTTTACTTACTTACTACCAGTAGGGGTGTGCT
AGCTAGGAGCTAGCCCATTGTACCTGTGTCGCACCGTTGGAAAATAGTTAGCTCGCGATG
TGCACCGCAATGTTTTTATCAAAAAAAAAAAAAAAA

Homology of Contig U35_2858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56970.1	399	3e-152	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g06640.1	361	0.0
Arabidopsis v10	AT3G60830.1	363	2e-169	\| Symbols: ATARP7, ARP7 \| actin-related protein 7 \| chr3:22474298-22476000 FORWARD LENGTH=363