barSeed - Barley Seed Development Database

Probe CUST_37408_PI390587928

Source Contig U35_2859

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37408_PI390587928	Hv_44K_v2	GTAGGATCTAAGATTGGCGTCTATTTTTTACTAGTAGGGGTGTGCTAGCTAGGAGCTAGC	559	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.452	1.532	1.149	0.864	0.380	0.400
Raw	3053.587	5111.147	3316.957	3943.377	602.924	694.304

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371401	1669	2e-24	1504 - 1563	100	60 / 60	plus	ABC06808
MLOC	MLOC_12725.1	1330	2e-24	1177 - 1236	100	60 / 60	plus	ABC06808
JLOC1	JLOC1_8549.1	1398	8e-25	1178 - 1237	100	60 / 60	plus
Harvest21	ABC06810	673	3e-25	55 - 114	100	60 / 60	minus
Harvest21	ABC06809	1401	3e-25	1262 - 1321	100	60 / 60	plus
Harvest35	U35_2859	673	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_2859 673 Hv_44K_v2
GATTATGGTATTGTCCACCAGCTAATTACTAGTGTTTCAAACGTCGCATCGGAGTACCAA
AAGCAACTGCTTGAGAACACTATGTTATGTGGTGGCACTGCATCTATGACTGGTTTCGAG
GACAGGTTTCAGAGAGAAGCAAATCTGTCTGCTTCAGCGATCCGCCCTACTCTTGTGAAG
GCGCCGGAGTACATGCCGGAGGACCTGGCGCGGCACTCGGCGTGGCTGGGCGGCGCGATC
CTGGCCAAGGTGGTCTTCCCCCAGAACCAGCACGTCACCAAGGGCGACTACGACGAGACC
GGCCCGTCCATCGTCCACAAGAAGTGCTTCTGACCGAGAACGAACCGCAGGCGCGTACGT
ACGCTCGGACCAGCAAAGCTCTACTGCGTGTAGGGGCCGGCGGCACTGGCACTGGTGTGG
TGTGGTGTCCTTCCTCGTCTTATGCTGGGCGTCTCTGAGAGAGAGAGAGAGAGAGAGAGG
GGGGCTATTCATGGCCTCTGGCTATGGTTTAGACGTGTCGTTGCTACCTAGCTTACCTAG
CTATCCATTCGCAGATTGAGTAGGATCTAAGATTGGCGTCTATTTTTTACTAGTAGGGGT
GTGCTAGCTAGGAGCTAGCCCATTGTACCTGTGTCGCACCGTTGAAAATAGTTAGCTCGC
GATGTGCACCGCA

Homology of Contig U35_2859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56970.1	399	3e-64	protein\|actin, putative, expressed
Brachypodium v1_2	Bradi1g06640.1	361	4e-68
Arabidopsis v10	AT3G60830.1	363	8e-54	\| Symbols: ATARP7, ARP7 \| actin-related protein 7 \| chr3:22474298-22476000 FORWARD LENGTH=363