barSeed - Barley Seed Development Database

Probe CUST_37400_PI390587928

Source Contig U35_2867

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37400_PI390587928	Hv_44K_v2	CCTTTTTTAGTTTTTGTGCTTGTATTGTTCGTTTCAGATGCATGCTATATGCGTCCAAAA	951	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53111.1	2540	7e-23	293 - 349	100	57 / 57	plus	ABC06990 ABC10748
MLOC	MLOC_53110.3	3401	7e-23	683 - 739	100	57 / 57	plus	ABC06990 ABC10748
JLOC1	JLOC1_34089.1	2207	4e-23	1869 - 1925	100	57 / 57	minus
JLOC1	JLOC1_34088.1	3403	4e-23	689 - 745	100	57 / 57	plus
Harvest21	ABC06990	1024	3e-25	952 - 1011	100	60 / 60	plus	ABC06990
Harvest35	U35_2867	1024	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_2867 1024 Hv_44K_v2
GGAGGGGTGAAGCGGCGAGCGAACTCGAGCTGGAAAAAGCAGCAGCAGACCAGAAACTCT
CTTGCCGCACACCGCGTCCGTGACCGTGACCTCCCTGCCCGACGAGCGCTCTACCGATGG
CATCTCAGGATTCCAAGCCCGCGCAAGTCCCGGCCGCCACCGAGCTGACGGCCCCGGCGG
CTGCTGCCGCTGGGGAGGCGCCGAATCCGACTTCCCCGACAGCAGCCCCAAACCCTAGCT
CCGCTGCGGCTGCCGCCGCCGGTGGGGCAGCCACGGATCTGGAGAAGAAGATGCGCCGCG
CGGAGCGGTTTGGGACGCAGGTGGTGATGTCCGAGGACGAGAAGCGAAGCAGTCGCGCCG
AGAGGTTTGGGACTGGATCTTCGAATGAAAAGATGGAGGAGCAGAAGAAGAAGTCCAGGG
CTGAGAGGTTTGGCCTTCCTACGCCCTCTTCTGATAATACCGAGGCTAAGAAAAAAGCTC
GCTTAGAGCGATTTGGTCAGAGTACAGAAGTTGGCAAGGCGGAAGAAGAGAAGCGAAAGG
CACGAGCCCTTAGGTTTGCAGGAGCACCTAGTGGGTCATCTGAAGGAAAGGACAAAGACA
CCTCCAAGCCGGACGCGGCGACTGTAGCTGGCACGGCATGATGGAAAACAGCCCCTGCCT
TTTGAGGGTCTCAGATACGCTCGTTCCTCGAGACGTCGGTGAAGCCGTACCGTAGTTTGT
ACAAGACTAACAACACCAATGGCGTCATGTTGTCGGAGCCATTCCTGTGCTGTTTGCTGT
GTAGTGCTTGATGACTTCCTTGCTGTACTCTGCTGGGAGCCATTTGAGTGCTGTTTACCG
TGTAGCACTTGAGGACTTCCTTACTGTACTCGCTGGGCAGCCTATCGTCTGTTTGCTGGT
TGGTCTGGGGACACCTGTGTACTACGTTTACTTCCTAGCCATGCACTCGGGCCTTTTTTA
GTTTTTGTGCTTGTATTGTTCGTTTCAGATGCATGCTATATGCGTCCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_2867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17490.2	176	8e-56	protein\|expressed protein
Brachypodium v1_2	Bradi1g66010.1	178	7e-61
Arabidopsis v10	None