barSeed - Barley Seed Development Database

Probe CUST_373_PI415269222

Source Contig TA35842_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_373_PI415269222	Hv_44K_v2	AATGGACCAAACAGACCAAGCTATTGAGCGTTCGAAAATGGTTGTTGCACAAACTGGTGA	631	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.374	0.481	1.205	1.797	1.042	1.321
Raw	187.961	371.271	829.599	2029.939	394.914	551.265

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56623.2	1290	7e-23	615 - 674	98	59 / 60	plus	ABC07769
MLOC	MLOC_56623.1	1374	7e-23	638 - 697	98	59 / 60	minus	ABC07769
JLOC1	JLOC1_36646.1	1482	4e-23	681 - 740	98	59 / 60	plus
Harvest21	ABC37111	509	1e-23	138 - 197	98	59 / 60	plus
Harvest21	ABC07769	1255	1e-23	562 - 621	98	59 / 60	plus	ABC07769
Harvest35	U35_41853	509	1e-23	138 - 197	98	59 / 60	plus
Harvest35	U35_2674	1327	1e-23	634 - 693	98	59 / 60	plus

Contig Sequence (792 bp)

>TA35842_4513 792 Hv_44K_v2
TTTCTCCGCCTAATTCCTGCGTGCCAGCACACAGCTGGGCAGCTCACACGACTCCAGCCC
CCAAACCCAACGGCCCCGCACCAACCCTCCTCCCCCTCCTCGACCCATCCGCCGCCCTCC
TCGCCTCCACCGGAAGAGCTGCTCCCCACGCAACCGGGCGGATCCCGCTAGGCGTAGGCG
GGGATCCAGCAGCCGCCATGGCGGCGAGCGACGTGCCCATGAGCCCCGAGCTCGAGCAGA
TCGACGGCGAGATCCAGGACATCTTCCGCGCCCTACAAAATGGGTTCCAGAAGATTGACA
AGATCAAGGACTCCAACAGGCAGTCCAAGCAGCTGGAAGAACTCACTGGGAAGATGAGGG
AGTGCAAGCGCTTAATCAAAGAATTTGATCGTGTACTCAAGGATGAGGAGAAAAGGAATA
CCTCCGAGGTCAACAAACAGCTAAATGACAAGAAGCAATTTATGATCAAGGAGTTGAATT
CATACGTCACCTTGAGGAAGACGTACCAAAGTAGCCTTGGTAATAAGAGGATTGAACTAT
TTGATGCTGGTAATGACCAGGTAGCTGAAGATAACGTTCAAATGGCATCAGAAATGTCAA
ATCAACAACTGATTGATTCTGGAGTGAGACAAATGGACCAAACAGACCAAGCTATTGAGC
GTTCGAAAATGGTTGTTGCACAAACTGGTGAAGTNGGAGCTCAAACTGNTACAACTCTAA
CACAGCAAANTGANCAAAATGAAGAGAATTGGCAATGGGGCTAGATTCTGNTCNTTTCTC
ATTGAAAAAAGG

Homology of Contig TA35842_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44350.1	267	1e-96	protein\|sec20 domain containing protein, expressed
Brachypodium v1_2	Bradi1g20080.1	268	8e-100
Arabidopsis v10	AT3G17440.1	269	6e-80	\| Symbols: NPSN13, ATNPSN13 \| novel plant snare 13 \| chr3:5969909-5972290 REVERSE LENGTH=269