barSeed - Barley Seed Development Database

Probe CUST_37387_PI390587928

Source Contig U35_2880

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37387_PI390587928	Hv_44K_v2	TGTGTGTGCTGCGCAATGCTTTATATGGGTAACCTGTACCTAAATAATTATTATTGGAGA	1342	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.681	1.734	1.057	0.781	0.254	0.264
Raw	100.219	148.738	83.879	99.319	11.103	13.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51123.1	1067	3e-24	1009 - 1067	100	59 / 59	plus
Harvest21	ABC06762	1410	3e-25	1343 - 1402	100	60 / 60	plus	ABC06762
Harvest35	U35_2880	1418	3e-25	1343 - 1402	100	60 / 60	plus

Contig Sequence (1418 bp)

>U35_2880 1418 Hv_44K_v2
GCGCCCTTCGGTGGACCACCGCTTCCTTCTCTTGACTCTTTCTTCCCTTTCTCGCGAACC
AGCAAAACCAAGAGAGAAATCGCGTGTTGATTTGACGAGCAGACCGACGCCAACGAATTG
GGCATTCGAGAGGAGGAGGACGTTTCTAGACTTAGTCCACCGGATCAAGAGAGGAGAACA
GTCATCCTCGACGTTGCCGCCGTCGCCAGCAAGGAGTTCGATCTGTTGAGGGGAGTTTTG
GATGGGCGACCATGTGGTGGTGAATGTGGACGGTTTGGCGAACACCAAGGATGATGGCGT
TGCTGAGAAGCCATCTGAGGCTGTGTTGGTGGCTGCTGTTGATATGGTGGAGGATGGTGG
CGAGGATGAGCCACTCATCCCGGCTGCGGAGTGCCGCATATGCCAGGAAGAGGACAGCAT
CAAGAATCTCGAGAAGCCGTGTACGTGCAACGGCAGTCTGAAGTATGCTCATAGAGCGTG
TGTGCAACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATTTGCCATGAGCAATA
TAAGCCTGGGTACACAGCACCACCACGTGTTCAACCAGATGAGACCAACATAGATATAAG
TGGGGATTGGACCATTACAGGAGCTCCTCTGGATTTGCGTGACCCAAGAATTCTTGCTGT
AGCAGCTGCACAGCGTCGTCTTCTTGAAGCAGAGTACGACGAATACGGTGGTACTGATGC
AAATGGTGCTGCATTCTGCCGTTCTGCTGCACTCATTCTAATGGCTCTGTTGCTTCTGAG
ACATGCATTGTCGATCTCGGACAATGAAGGAGATGATGACGCTTCTACCATGTTCTCTCT
TTTTCTTCTCCGAGCCGCTGGATTCCTGCTGCCATGCTATATAATGGCATGGATCTTCAG
TATTTTGCATCGCCGGCGACAAAATGAGGAAGCGGCCTCAATTGCCACGGCAGAGGTGGC
ATTCATCCTGCAATCAGCCCAGGGCCGTGCCCTTCAGTTTACCATCGCTCCAGACCCCCC
AACCACTCCACAGCATGAGCCACACCAGCAGCAACAGCAATAGTTCAACAACCCAGTAGT
TCCCCAAGTACCTGGCACTATGTGCGCTTGAAGATGTAGGTCCGGGTGCCTATTCTGTTG
TTGGTACTGGCTCATCAGGAATGCTAGGAAGCCTTCCTGTGGCCAAGTAAAAACCTCGTA
CGATGTCACTGTCTTATTTGTCTCGAGCAATGCGACTAAATCTGTCTGTCTGAATGTAAT
TTAAGCATTGATTTAATGTAAATTTAATATGTATTACCTTACTATTTTGGTGCAACCCGT
GTCATGTGCTCTGAGCGAAATATGTGTGTGCTGCGCAATGCTTTATATGGGTAACCTGTA
CCTAAATAATTATTATTGGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2880 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g38800.2	279	9e-135	protein\|zinc finger family protein, putative, expressed
Brachypodium v1_2	Bradi4g14247.3	284	4e-157
Arabidopsis v10	AT3G47550.3	288	6e-89	RING/FYVE/PHD zinc finger superfamily protein \| chr3:17523841-17525278 FORWARD LENGTH=288