barSeed - Barley Seed Development Database

Probe CUST_37378_PI390587928

Source Contig U35_6048

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37378_PI390587928	Hv_44K_v2	AACTGGTGTGTGCTGCTGCGTTGTGCAATCCAATGACTTCTTCTTGTTTCTGTCAAAAAA	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29110.4	1501	3e-22	1116 - 1171	100	56 / 56	minus	ABC13170 ABC13171
MLOC	MLOC_29110.1	6672	3e-22	6284 - 6339	100	56 / 56	minus	ABC09290 ABC10354 ABC13170 ABC13171
JLOC1	JLOC1_19423.2	906	1e-22	571 - 626	100	56 / 56	plus
JLOC1	JLOC1_19423.1	870	1e-22	535 - 590	100	56 / 56	plus
Harvest21	ABC13171	335	3e-25	265 - 324	100	60 / 60	plus	ABC13171
Harvest35	U35_6048	579	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_6048 579 Hv_44K_v2
CGAGTCGTTGTATCCAGCAGCAGTTGGAAGTTGGAACCCCCCCACCCTCGTCTCCAGATC
CAAATCCAGATCACCCACCCACCCGTCCATGGAGCTGGAGGCGCCGTCGCCGGCGAGGTA
CCTGCTGGGCGCGGCGATCATGATGGCCGGCGTCGTGCTCCCGCTCGCCTACATGATCTT
CCGCAGCAAGCGCTCCTCCTCCTCCTCCGCGTCCTCCGCATCCGCCGCCGCCTCCGCCGC
CCCCTCCTCCTCCTCCTCCTTCTCCAAGCAGACGGAACAAGGGGCTCTTCTGACGGCCCG
CGCGCTCGCATTCCGTTTGGCGATGCTGTTGTAGCTGGTAGCGCTAGCTCCATCCTACAA
GAAAACAAATCCCATCTGTATCCGCGGTCTGTCTCTGGTGTAGTAGTGGTAGCATTTGAG
CTGTGAATCTCTGTCTCTAGTATGTCTGTCTCTGAGAAGTTGAGCAATTTTTTTTGGTGA
TGAAATCAAATGAAATGAAAGGGAAACAAACTGGTGTGTGCTGCTGCGTTGTGCAATCCA
ATGACTTCTTCTTGTTTCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None