barSeed - Barley Seed Development Database

Probe CUST_37373_PI390587928

Source Contig U35_6053

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37373_PI390587928	Hv_44K_v2	TGGGAAACACAGTTTAAATAAAAGTTACTTTGAAGCCGAGATGGTCTGGCAATCAAAAAA	648	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.047	1.883	2.017	1.267	0.721	0.547
Raw	11.884	31.091	31.585	28.918	4.903	3.985

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8941.1	734	9e-22	402 - 456	100	55 / 55	minus	ABC24081
MLOC	MLOC_8941.2	778	9e-22	73 - 127	100	55 / 55	minus	ABC24081
JLOC1	JLOC1_5895.1	1219	5e-22	652 - 706	100	55 / 55	plus
Harvest21	ABC24081	725	3e-25	11 - 70	100	60 / 60	minus	ABC24081
Harvest35	U35_6053	719	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (719 bp)

>U35_6053 719 Hv_44K_v2
ATCCACTAAATCCCTATGCCGCCACCACCCCAATCATTGCCTCCATTTCCATGCTAGACC
AACCAGCCTGCAGCCATCCATCCCACCTCGATTCCAGCAACTCCCCAACCAGGTGTGACC
ATGCGCCCGAGGAGAGCGAATGCTCCTTCCTCAAGATCGAGCATGGCGGTCAGAGCCACT
TCCCGATCCAACAGCAGGGCGTTACCCAAGCCCCGCTCGCCGCCTCGCCGTACCCATCCG
AGCCGGACCCCATGCCATCCCTCGCGGTCTGCCATGGGTGCTCGCCCCCGAGCTCGTCGT
AGCCGCCCCACCAAGCCCTGTTGTCGGCTCGCACCGCCCGTGTCGGAGAGTGTCATCGCC
AATTACCAGCTCCATCACCAGGAGGCCGCCATGGTTGTCCCCGTCGCTCATGCTTCGCCT
CGTCTCGGCGGAGCTCAAGGCACCAGATCCGCGCCAAATCTTCCGGATTCGCCCGTCGCC
GACCTCGTGCACGTTGGATCTCGCCTCCTCTGCCTCACCTCGCTCGAGATGCCTCGCACA
ACTGACAGCAACTTGCGCTCTTGCACTTGCATCTCGCATTCCCAGCCACGAAAATAGAGT
TTTTCGCTTGTAGTTTGTTTCAGTTAGCGTTAGGCTATGTTTTATTTCTGGGAAACACAG
TTTAAATAAAAGTTACTTTGAAGCCGAGATGGTCTGGCAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None