barSeed - Barley Seed Development Database

Probe CUST_37370_PI390587928

Source Contig U35_6056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37370_PI390587928	Hv_44K_v2	GTCGAATTTGATCTCGTGATCTCTTCCAGTTTAGGTTAAAGTTCATGTTGCATCCATGGC	671	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.270	1.585	1.240	0.912	0.364	0.378
Raw	6888.387	14132.203	9438.930	11108.423	1515.933	1719.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74118.2	1329	2e-24	1106 - 1165	100	60 / 60	plus	ABC12742
MLOC	MLOC_74118.1	1118	2e-24	1018 - 1077	100	60 / 60	plus	ABC12742
JLOC1	JLOC1_49380.1	1155	8e-25	898 - 957	100	60 / 60	plus
Harvest21	ABC12742	791	3e-25	672 - 731	100	60 / 60	plus	ABC12742
Harvest35	U35_6056	791	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (791 bp)

>U35_6056 791 Hv_44K_v2
CGACTCCTCCCCACCTCCTCTCCTTCCATCCCTCGCCGCCGGCCACCGAGAGCCCTCCCG
TCCGTCGTCGTCGCGATGGCCGCAGCCAACGGCACCGGCGCCGACCCCGTGCACGAGCCT
CCCCACAAGGTCGCCAAGACGGCGCCGCTGCTCAAGGTCAAGAAGCTCTCCGACAAGGCC
GTCCTGCCGTCCCGCGGCTCCGCCCTCGCCGCCGGCTACGACCTCTCCAGCGCGGTGGAG
ACGGTGGTGCCGGCGAGGGGCAAGGCGCTGGTGGCCACCGACCTGAGCATCGCCGTCCCG
GAGGGCACCTACGCGCGCATCGCGCCGAGGTCGGGCCTGGCGCTCAAGCACTCCATCGAC
GTGGGCGCCGGGGTGATCGACGCCGACTACCGCGGCCCGGTCGGCGTCGTGCTCTTCAAC
CACTCGGAGGCGGACTTCGCGGTGAAGCCCGGCGACCGCGTCGCGCAGATGATCGTCCAG
GTGATCGCGACGCCGGAGGTCGCCGAGGTGGAGGACCTCGACGCCACCGTCCGCGGGGAG
GGCGGGTTCGGCTCCACCGGCGTCTGAGCTCCGGTAGATAGTTGCTCTGGAGAAGTGATC
CGTTGTTTAGGATGGTGGTGGAACCCTAGGGTAGGTACCCGCCGTTCGATGATGGTTGTG
CGTCTCATATCGTCGAATTTGATCTCGTGATCTCTTCCAGTTTAGGTTAAAGTTCATGTT
GCATCCATGGCTATTCCTGCTTGTTGCCAATGAACTCCATGAGAATTTCCAGTCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_6056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46640.1	226	1e-91	protein\|deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed
Brachypodium v1_2	Bradi1g12830.1	164	4e-96
Arabidopsis v10	AT3G46940.1	166	2e-75	\| Symbols: DUT1 \| DUTP-PYROPHOSPHATASE-LIKE 1 \| chr3:17288367-17288867 REVERSE LENGTH=166