barSeed - Barley Seed Development Database

Probe CUST_3736_PI390587928

Source Contig U35_14379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3736_PI390587928	Hv_44K_v2	AGGGTTGTCAACTCTTGCCTCCTATAATCAAACGACTATGCATGTTCGGCGTTTAAAAAA	1068	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.141	1.252	1.057	0.913	0.377	0.392
Raw	2569.010	4290.573	3291.427	4468.463	639.053	738.052

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360138	996	7e-23	923 - 983	98	60 / 61	plus	ABC01537
MLOC	MLOC_24179.1	4758	7e-23	11 - 71	98	60 / 61	minus	ABC01537
Harvest21	ABC01537	1182	3e-25	1069 - 1128	100	60 / 60	plus	ABC01537
Harvest35	U35_14379	1182	3e-25	1069 - 1128	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_14379 1182 Hv_44K_v2
GCACCCACTCCCCACTCCGCCAAGAAACAGCAACAGCCACACGCCCACGCGCACACACCA
GATCGTCGACAGCGATGGCAGCGGCAGCGGGAACGAGGGAGGAGATGGTCTACATGGCGA
AGCTGGCGGAGCAGGCCGAGCGGTACGAGGAGATGGTCGAGTTCATGGAGAGGGTCGTGG
CAGCGACGGGGACCGGCGAGCTCAGCGTCGAGGAGAGGAACCTGCTTTCAGTAGCGTACA
AGAACGTCATCGGGGCGCGTCGTGCTTCCTGGCGCATCGTGTCCTCCATCGAGCAGAAGG
AGGAAGGGCGCGGAGCTGCGGGGCACGCCGCCGCGGCGCGCGGGTACCGCGCACGTGTCG
AGGCCGAACTCTCCAACATCTGCGCGGGGATCCTCCGTCTCCTCGACGAACGCCTAGTCC
CCGCCGCCGCCGCCGTCGATGCCAAGGTATTCTACCTGAAGATGAAGGGAGACTACCACC
GCTACCTCGCGGAGTTCAAGTCGGCCGCCGAGCGCAAGGATGCCGCCGACTCCACCCTCG
GTGCCTACCAGGCCGCTCAGGACATAGCCATGAAGGAGCTGCCACCGACTCACCCCATCA
GGCTGGGCCTCGCGCTCAACTTCTCTGTGTTCTACTACGAGATCCTCAACTCGCCTGATC
GCGCGTGCTCGCTCGCCAAGCAGGCTTTCGATGAAGCCATTGCTGAGCTGGATTCCCTCG
GGGAAGATTCCTACAAGGACAGCACCCTGATCATGCAACTTCTCCGTGACAATCTCACCT
TGTGGACCTCTGATATGCAGGATGACGCTGGCGATGAAACGAGGGATTCAAGCAAGCCTG
AGGATGAGCAGTAGTGAAGGGTCCTAGCTACTGCGCTCTTTCTCTCTTAACCTTCGGGTA
GTTATGATGCTTGTACAAGGACCATTTTCGTTTGTCCTTTGTCGCTGGATCTTTTACCTA
CCCTTTCTTTGGTTATATTGTTTTATACATCGCCGGCCACGTGCATGATTTTACCTTCCA
ACTTGAATCCTGCGCCTGTATGCACGGCTTCCTTAAGAATTCAACCACAGGGTTGTCAAC
TCTTGCCTCCTATAATCAAACGACTATGCATGTTCGGCGTTTAAAAAAATTTCTTTCTGG
CTAGGTTATACTACTCCGTGGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_14379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g37490.1	265	5e-142	protein\|14-3-3 protein, putative, expressed
Brachypodium v1_2	Bradi3g38640.1	263	2e-151
Arabidopsis v10	AT1G78300.1	259	7e-125	\| Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA \| general regulatory factor 2 \| chr1:29461883-29463052 FORWARD LENGTH=259