barSeed - Barley Seed Development Database

Probe CUST_37369_PI390587928

Source Contig U35_6057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37369_PI390587928	Hv_44K_v2	TGTAGCTCCCTGTCAGACCCTAGATGCTAATTTCGGTATGAACTTGAGGAGATCATCAAA	1311	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.097	1.436	0.952	0.911	0.452	0.569
Raw	520.959	1057.023	622.293	945.348	159.805	222.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371006	1485	7e-23	1416 - 1472	100	57 / 57	plus	ABC13255
MLOC	MLOC_78051.1	1278	7e-23	29 - 85	100	57 / 57	minus	ABC13255
JLOC1	JLOC1_52026.2	1375	4e-23	1194 - 1250	100	57 / 57	plus
JLOC1	JLOC1_52026.1	1369	4e-23	1188 - 1244	100	57 / 57	plus
Harvest21	ABC13255	1376	3e-25	1312 - 1371	100	60 / 60	plus	ABC13255
Harvest35	U35_6057	1376	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1376 bp)

>U35_6057 1376 Hv_44K_v2
GGCAGGTTGACCTGCTGGTGGTGGTGTATTGCTGGTTGCAGTGGTGTTCCTCTCCCAGGT
TGTAGTGGTGTTCCTCTCCCAGGTTGCAGTGGTGCTCTTCTCCCAGGCTGAAGGTTCTCC
CCGCCAATAGCGAACCGTTCTGCCGTTGTACTCAGTAGGACTCCTTGTTTCCGGAGCTTC
CTCGTGCCTTCACCCGCCGAGGAGTCCACCAGCCAAAGACCATGTGGCACCGATCTGGAC
TGATCCGCCTCCACCTCGCAAGAATCGCCGGCCGCGTTCGACGACCCCCACAGCCTCCTG
CTCCAACAGCCACCTTCTCAACCTCCACCTCCGCTTCATCCTCTTTCCACCACAATCTTG
GACCCTTTCTGGATTCCAGCAAAGTTCCTCCCTCTCGAAGCCTATCGAACCAGGCAGGCA
GTGATGGCGTCGGCGGCGAGTGCTGGAGTTGTGGCTCCAAGGGGGCATTCCTCTCCTGTG
GGTCCTGCAGGAGCGTGCAGCCCGTCGATCCCGCGGTCGACTACTTCCAAATATTTGGCC
TGGACAGAGGATACGACGTAAAGGATACCAACTTAGAAGGGAAGTACAAAGACTGGCAGA
AGAAGTTACATCCTGACCTTGTTCATTCTAAATCAGAGAAAGAGAGAGATTTTGCAGCCG
GACAGTCAGCACTTGTCATCGAGGCATATCGCACACTGAGCAAACCTTTACCGAGGGCAT
TGTACTTGCTGCAACTTGAGGGAATACACGTTGATGAGGAGAAGACTATCAATGATCCGG
AACTTCTTATGGAGATGATGGAGATACGCGAAGCAGTTAGCGAAGCCGGCGATTCCCAAA
CTCTGAAGAAGATCCAATCTCAGGTGAAGAGTAAGCTCGAAACCTGGTCCAAATCCTTCC
AGGAGGCCTTCGACAAGAGGGACTTCGACAGCGCAGTGGAAGCTACACAGAGAATGAGAT
ACTACGAACGTGCCATGGAAGAAACTGTGAAGAAGCTTTGATCTTGGCCCCGACTGGGAG
CCATGTAAATTTTACGCCTTCAAGAAAACTAGACGGATCCGCTGCGCCTGGAGTCTGGTG
GCTGACACGCGCTTATAAGTTGGTTGCAGGTCGGTTGAGTCACGGTGACAGGCAGGCTCT
TACTGCGTAGTTTGACTGAATAAAGAGTGACTCCGTTTTTTTACGTTGTTTTCCCTGCGT
TACCTGCGTTGTATGCTGGTTGGCTGGTGTGGCCGTGGGAAATTACTGCAGGCAACAAAT
TACTGTGCTGGTTGCTTTTCGTGCGCACGTACCGAAGGCAGGTCAAGGAACTGTAGCTCC
CTGTCAGACCCTAGATGCTAATTTCGGTATGAACTTGAGGAGATCATCAAAAAAAA

Homology of Contig U35_6057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27070.1	261	2e-117	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi4g07780.1	259	7e-135
Arabidopsis v10	AT5G06410.1	252	9e-83	DNAJ heat shock N-terminal domain-containing protein \| chr5:1959719-1961132 REVERSE LENGTH=252