barSeed - Barley Seed Development Database

Probe CUST_37363_PI390587928

Source Contig U35_6063

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37363_PI390587928	Hv_44K_v2	GTATAAAAATGAACTCAGGAGAAGCATCTTCGAGGCCTATTCAGGTATACTTCAGGGAGT	1204	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.043	1.363	1.987	1.085	0.362	0.384
Raw	432.746	875.463	1107.978	1008.166	110.462	130.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53998.1	3373	2e-24	804 - 863	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.2	3372	2e-24	804 - 863	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.3	3372	2e-24	792 - 851	100	60 / 60	minus	ABC14129
MLOC	MLOC_53998.4	3370	2e-24	790 - 849	100	60 / 60	minus	ABC14129
JLOC1	JLOC1_34734.1	3488	8e-25	2584 - 2643	100	60 / 60	plus
Harvest21	ABC14128	1284	3e-25	1205 - 1264	100	60 / 60	plus
Harvest35	U35_6063	1284	3e-25	1205 - 1264	100	60 / 60	plus

Contig Sequence (1284 bp)

>U35_6063 1284 Hv_44K_v2
GCAACGNGCTGTCAAGGATGCCATTGTACCTCTTGTGATGCCGTTTATAGAGGGCAATAT
AACAAAGCCTGACTGGCACAGCAGGGAGGCTGCTACATTTGCATTTGGTTCCATTCTTGA
AGGTCCTTCAGTTGAAAAGCTTGCACCCCTGGTTCAAGCTGGCTTTGATTTCTTGCTAAA
TGCAACCAAGGATCAAAATAACCATGTCAGGGAGACTACTGCATGGGCACTTTCGAGGAC
CTTTGAGTTTCTACATGCACCAACCAGTGGTGTTTCTGTAGTGACAAATGCAAACCTTCC
TCATGTTCTAGAAATTATGTTAACAAGTATCAAAGACTCCCCTAATGTTGCTGAGAAGAT
CTGTGGTGCCCTGTATTTTCTTGCTCATGGCTATGAGAATGCAGGGTCTATGTCATCAGT
GCTGTCACCCTATTTTGGTCAGTTAGTGTCAGCTCTCCTTGCCACTGCTGATCGTTCTGA
TTCCAACAACTCCAGGCTTTGTGCATCTGCATATGAAACACTTAATGAGATTGTGAGATG
CAGCAGCATTGCAGACACTTTGAACATGATTGTGTTATTATTGCAAGAGATCTTGAAGAG
AATTAAACCAGACCTTTGAGTTCCAGATTGCATCCTCTGAGGACAAGGAAAAGCAAAGTG
ACCTTCAAGCCTTGCTATGTGGTGTTGTTCAAGTAATCCTTCAGAAGTTCAGCAACTGTG
ATGATAAATCAGTAATCATTCAGTTTGCTGACGAAATAATGGTGTTATTTCTCCGGGTTT
TCTCATGCGATAGTTCTAATGTGCATGAAGAAGCAATGCTTGCTATTGGTGCTCTTGCTT
ATGCTACTGGACCGGAATTTGTGAAATACATGCCAGAGTTTCACAAGTACCTTGAAATGG
GCTTACAAAATTTTGGTGCATATCAAGTATGCTGTGTTTCTGTGGGTGTGGTAGCAGACA
TCTGTCGTGCCCTGGATGAGAAGGTACTCCCTTACTGTGATGGTATCATGTCTGCCCTTC
TCAAGGACCTTTCGAGCCCAGAGCTCCACCGTTCTGTGAAACCACCAATTATGTCATGCA
TAGGAGATATTGCACTTACAATTGGTGAGCATTTTGAGAAATATGTTCCATACACTGTGC
CTATGTTGCAAGGAGCTGCAGAGCTTTGTTCTCGCATGGACCTTCCTGATGATGACAGTA
CAGAGTATAAAAATGAACTCAGGAGAAGCATCTTCGAGGCCTATTCAGGTATACTTCAGG
GAGTCAAAAGTTCAAAATCAGAGC

Homology of Contig U35_6063 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18350.1	871	0.0	protein\|importin subunit beta, putative, expressed
Brachypodium v1_2	Bradi1g65390.1	870	0.0
Arabidopsis v10	AT5G53480.1	870	6e-138	ARM repeat superfamily protein \| chr5:21714016-21716709 FORWARD LENGTH=870