barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37362_PI390587928Hv_44K_v2AGTAAAGTTGTCGCTGATGGTGTGGAACTGTTACACTCACCCTATACTCCAGCGATTAGT608GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5111.4621.3380.8080.3180.386
Raw 2846.2674310.5633424.5533273.247449.587597.007



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_53998.133739e-22154 - 2159760 / 62minus ABC14129
MLOCMLOC_53998.233729e-22154 - 2159760 / 62minus ABC14129
MLOCMLOC_53998.333729e-22140 - 2019760 / 62minus ABC14129
MLOCMLOC_53998.433709e-22140 - 2019760 / 62minus ABC14129
JLOC1JLOC1_34734.134885e-223232 - 32939760 / 62plus
Harvest21ABC141296793e-2512 - 7110060 / 60minusABC14129
Harvest35U35_60646793e-25609 - 66810060 / 60plus



Contig Sequence (679 bp)

>U35_6064 679 Hv_44K_v2
TCAGGTATACTTCAGGGAGTCAAAAGTTCAAAATCAGAGCTAATGGTTCCTTATGCTGGC
CATATTTTCCAGTTTGCCGAACTGGTCTTGCGAGAGACATCAAGGGATGAGGGTCTGACG
AAAGCTGGAGTTGCCTTGGTCGGGGACCTCGCAGATGCGCTAGGACCTTCCATCAAACTG
CTGCTCAAGAATTCAAACTTCCACTCGGAGCTCCTTGGGCGCTGCTCCCAGTCTGATGAC
GAACAGCTAAGGGAGACTGCATCCTGGGTCCAGGGTGTGATCTCACGTGTGCTGGTTTCA
TGAGCGAAAGCCTCTCCAGTAAAGCTGCTGGTTCTTTATCTGGATCGTTCAGCGTTGTTG
ATGGTTCTCTGGGCAAACTACTTCTCTTGCCAGATGAAACGTTATTGTGAAATGTGCTGC
ATATATCTCATGTTATTATGTCGCAAGACAAAGGTCGCAGGAGATCATTTATGCTTGTCA
TGTTCGTAATAGTGGCAGCGGCTTGCCATTGTCTAAAGTGGGTTGGGTTTCTGTTGCATT
TTGGTCAGGTGTCCATGTGAGTCGATTGTAGTTGCAGCATCTGTGTCTTGTTGGCACCAT
TGCTCGTCAGTAAAGTTGTCGCTGATGGTGTGGAACTGTTACACTCACCCTATACTCCAG
CGATTAGTGGGATATACCG



Homology of Contig U35_6064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None