barSeed - Barley Seed Development Database

Probe CUST_37358_PI390587928

Source Contig U35_6068

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37358_PI390587928	Hv_44K_v2	TATTGTAAGGTGGTTCTTTTTTCGAAAATGAGCCAAAGCCCCGGCCTGGAAAGATGTATG	1404	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.830	2.008	1.048	0.867	0.365	0.386
Raw	464.255	766.124	363.613	449.565	70.942	80.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35161.1	1816	8e-25	1559 - 1618	100	60 / 60	plus
Harvest21	ABC20673	1003	3e-25	909 - 968	100	60 / 60	plus	ABC20673
Harvest35	U35_6068	1499	3e-25	1405 - 1464	100	60 / 60	plus

Contig Sequence (1499 bp)

>U35_6068 1499 Hv_44K_v2
AGACACGAGGAGAAAGACGACGACTCCTCTCCCGCCCCACCTCGGCCCCGAACCCCCGAT
CGGAAAATCTCAGCGGAAGCGTTGCACGTCTCCCCGGGCGCAGGATCTCGGGGCCCGGCG
GAGAACGTGGACCGGCACCGGCACGAACGCCAGCTGATCGAGCAAGAGCCTAGAGGGGAC
AGAGAGAAAGAGGTTCAGAAGACGAAGAGGAGATGTCGTCCGACGGCGGGGGCTCCCAGA
TGGGCGTCGCCGGCGCGCTGGGCCTCTCTGTCACGTCGTCAGTAGCCATTGTCATCTGCA
ACAAGTACCTCATGAGCACCCTTAAGTTCTACTTCGCGACGACACTGACAAGCTGGCACT
TGCTGGTCACCTTCTGCACGCTTCACATAGCGCAGCGTCTGCGCTTCTTCGAGGCGAAGC
CAATTGACGCGCAGACTGTCATCTCCTTTGGGTTTCTCAACGGGATCTCCATTGGCCTCC
TCAACCTTTGCCTTGGCTTCAACTCAGTTGGCTTCTACCAGATGACCAAGTTGGCCATTA
TACCATTCACCATGCTCTTGGAGACCATCTTTCTGAGCAAGAAGTTCAGCCAGAGCATTA
AAGCTTCCCTCATGGTCCTCCTCCTGGGGGTTGGCATCGCATCGGTCACCGATCTCCAGC
TCAATCTCCTTGGCTCGATCATCGCAGTGCTCACTATCGCCGCGACCTGTGTCTGCCAGA
TCCTGACCAACCAAATCCAGAGGAGGCTCAAGGTGTCTTCCACTCAGCTACTGTACCAGT
CCTCCTTGTACCAATCTGCAGTGCTGCTCATCACCGGTCCCTTCGTCGACAAGCTCCTGA
CAAAGAAGGATGTCTTCGCGTTCGAGTACACATTCGAAGTCGTGGTGTTCATCCTGCTGT
CGTGCGGGATCGCGGTGTCCGTCAACTTCAGCACCTTCCTGGTGATCGGCACGACGTCGC
CAGTGACGTACCAGGTGTTGGGCCACCTCAAGACGTGCCTCATCCTCTCCTTCGGCTACG
TCCTCCTCAAAGATCCCTTCACACTACGCAACCTCGCCGGCATCCTCATTGCCATCTTCG
GCATGGGCCTCTACTCCTTCTTCTCCGTCTCCGAGAGCAGGAAGAAGACCGAGGGCGCCA
TGTTGCCTGTCAACACCCAGATGAGCGAGAAGGATTCAGCACCGCTCCTTGGCACGAAAG
CCTCGCCGTGGCAGGAGAGCAGCGGGGCGGAGAACTTCGACGACGTGCCAAGGACCGCGA
AGAGCGCATTTAGCCGGCAGCTGAACCCGTAGCTTAGGATGGATGTGCTTGGTAAGTTGG
TATATCAGCATCAATATCTATTCTTTCCCCTTGGGGGTTTCTCCTACAATGACGAGAATT
GCTCGATGATGAAAGCAACGGTGGTATTGTAAGGTGGTTCTTTTTTCGAAAATGAGCCAA
AGCCCCGGCCTGGAAAGATGTATGCATCCATATATTAAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33920.2	371	0.0	protein\|transporter-related, putative, expressed
Brachypodium v1_2	Bradi3g28920.1	361	0.0
Arabidopsis v10	AT2G28315.1	342	1e-131	Nucleotide/sugar transporter family protein \| chr2:12088896-12090570 FORWARD LENGTH=342