barSeed - Barley Seed Development Database

Probe CUST_37355_PI390587928

Source Contig U35_6072

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37355_PI390587928	Hv_44K_v2	CTAATCACTGCTCATTTCCTGTAAGGAATCATTGTACTAATTCACATATCCTTTGGCTAT	738	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.000	1.178	1.566	1.365	0.599	0.515
Raw	294.959	553.608	633.179	841.774	134.110	124.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18346.2	1966	2e-24	190 - 249	100	60 / 60	minus	ABC14588
JLOC1	JLOC1_12696.1	1781	8e-25	1574 - 1633	100	60 / 60	plus
Harvest21	ABC14588	827	3e-25	739 - 798	100	60 / 60	plus	ABC14588
Harvest35	U35_6072	827	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_6072 827 Hv_44K_v2
GGCACGAGGCCAGGGTTGGCCCCACCAAGTTCTCCAAGGCTACGGACTCCCTGATTGTCA
GGAAATTTGGGGACGTGGAGCCAGGGAATTACTGGTACCATGTGTGTGAGGATGAGGCGG
AGCGTGTGCTCGCTCTGCCGCACCATGCCATATGTTTGGCACCAAGTTTGATGAGCATTG
TTAATGATATCATCTCGAGTATGCAACAAGACTTTGATTCCGTCCATGTTGGTGGCAGTG
TTGAGGACCTCATTCGGGGAATCGAGGATGGTGTTGATGTAGGAAGGCAAGTGTATATTG
CTGGAGAGGGGATCAACACGGTCTCCATGGAGGCGCTTAAGGCAAAGCACAACAACTTGT
GTTACCTGGATGAGTTTCAGAGGCTCTGGAGAAAAGACAGCAAGTGGTTCCTGGAGATGA
AGAGGCTAAATGCTGGAGTTCCTGTGAAGTTTGATGGGTACATGCGTGAACTAGTTGACA
GGGAGGTCTTCCTCAAGGGCAAGAAGAAGGTCGAGGTGCTCCGCTGATTTCTTCTCCAAG
ATAAGAGGGTGTTGGAGAACACGGCATGCTTTTTTCAAGTGAGTTGTGTGTAGACCATGT
CTGAATTTTGTTGTCAGGTTTAGCGTATAGATGATCCAGTCAGTATCACTTCGAGAGGAA
TTTTCGTAACCAGCATTCCAGCAATGTATAGCTCCGTGCTGCTAAGAGTACCTGTTCTGA
TCAATTAGTTCCTTAGCACTAATCACTGCTCATTTCCTGTAAGGAATCATTGTACTAATT
CACATATCCTTTGGCTATTTAGTTGAATTCATAAAAAAAAAAAAAAA

Homology of Contig U35_6072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g59070.1	455	6e-77	protein\|expressed protein
Brachypodium v1_2	Bradi4g38830.1	473	1e-84
Arabidopsis v10	None