barSeed - Barley Seed Development Database

Probe CUST_37350_PI390587928

Source Contig U35_6079

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37350_PI390587928	Hv_44K_v2	GCTTTGGAAGTCACGATTGAAAGCTTTGTGTACTTGTATTGTTACAGTTCATAACTTCAT	939	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.294	1.662	1.313	0.967	0.277	0.285
Raw	671.090	1336.123	912.489	1050.169	107.588	120.919

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51108.1	2274	2e-24	2144 - 2203	100	60 / 60	plus	ABC13373
JLOC1	JLOC1_32620.1	2200	8e-25	2118 - 2177	100	60 / 60	plus
Harvest21	ABC13373	1051	3e-25	53 - 112	100	60 / 60	minus	ABC13373
Harvest35	U35_6079	1067	3e-25	940 - 999	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_6079 1067 Hv_44K_v2
GTCTTACTACAACACTTCTTGTTGGTCTGTATGTTCAGTCACGTTTGTATCTTGGGCTTG
GAAGGGACGGCCTACTACCTTCAATATTTTCCAAAGTTCATCCAACACTGCATACTCCTC
TGCACTCTCAGATCTGGGTTGGTTGTGTTGCAGCAATCTTAGCTGGCCTCTTTAATGTGC
ATGCACTCTCTCATATTCTCTCAGTTGGCACACTGACAGGCTACTCGGTTGTATCAGCTT
GTGTGATCACACTTCGATGGAGCGACAAAGCAACTAATTCTCGCTCCTTTGCGAATATTT
CAATCTGGCAGGAGGGTGTTTTTTGTCTTGTCATAGTGGCTCTCTGTGGTTTTATAGCAG
GAATATCCTACCGGTTTAGCTATTCTATTGCTTTCATCATCATAGCCTTTGTGATAGCTA
CCATTGGCAGTTTTTCTCTGCTGTTTCGACAGGTCTATGTTCCTGTGGACCCGCCTCGTT
TTTCTTGTCCTGGAGTTCCTATGGTTCCGATTGTCTCTGTTTTCTTCAATATGTTTCTGT
TTGCTCAGCTACATGAAGAAGCTTGGTACAGATTTGTCATCCTTAGTCTCATCGCTGTGG
GGGTATATGCTGGATATGGTCAGTACAACGCTGTTCCATCCACTTCGGACCACTCATCTG
TTGCATACCATGGAGTGCCTTCTGAAGCCCCATGATCTATTGCAAGCCTCCAAATTTATC
TGAATGTATGTACCATCGGATCATCAGGGGAGGCCATGGTCGTACCCCTTTACCTGTATT
GCTCGAAGCCCTATGTGTAGTTCGTTCTCCATTCCATATGTACATCTGTATGAAATTTTG
GAGATCAGCCACCATATCATTTACCAATGAAATGACAGCGATAGTTTTGTTGAGCAGGAC
ACACACACACAGACACACACCAAAGATTCATCTGGAAAAGCTTTGGAAGTCACGATTGAA
AGCTTTGTGTACTTGTATTGTTACAGTTCATAACTTCATATGTACTTAATTCATCTGAGA
AATTTATAGTTTATAGTTTTTTTTGTTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43860.1	606	1e-107	protein\|amino acid permease, putative, expressed
Brachypodium v1_2	Bradi3g50560.1	604	4e-115
Arabidopsis v10	AT1G05940.1	569	7e-72	\| Symbols: CAT9 \| cationic amino acid transporter 9 \| chr1:1801365-1803942 REVERSE LENGTH=569