barSeed - Barley Seed Development Database

Probe CUST_37347_PI390587928

Source Contig U35_6082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37347_PI390587928	Hv_44K_v2	TCAGACCACCATTGATCTACCTCACTATGTACATATCCCCTATTTGAATATTACTGTTCC	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363239	1412	2e-24	1342 - 1401	100	60 / 60	plus	ABC05887 ABC05888 ABC05890
MLOC	MLOC_53631.1	204	2e-24	48 - 107	100	60 / 60	minus	ABC05888
JLOC1	JLOC1_34473.1	1391	8e-25	1313 - 1372	100	60 / 60	plus
Harvest21	ABC05888	1411	3e-25	1312 - 1371	100	60 / 60	plus	ABC05888
Harvest35	U35_6082	581	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_6082 581 Hv_44K_v2
ACACCGAGTTCCTCAAGGACCTCGANCGACGGCAAGATCGACAACGTCCCTGCCCCGGCC
ATCGCCATCGACTACTGGCGCCTCCCGGCCAACGCCACCCTCAAGGACGTGGTCACCGTG
GTGCGCGCCGACGAGGCTCACCACCGCGACGTCAACCACTTCGCATCGGACGTGTACTAC
CAGGGTATGGAGCTGAAGGCCACCCCGGCGCCGATCGGATACCACTGAGGCTTGGCCGTC
TTCTGCTGAATTTTGCATCGCTACTACTACCAAGCAAATGAGTGTTTCGTTTTGAAGGCT
TCCGAGGAAATGAGGGCTCTTTAGCTGTATAGGATGTCGCAATTGTTGCTCCTTTGGTAA
CTATCGAGTACTGAGAAATAAGCAGTGTGCTTGTCAGTTACGTATCTAGGATATTGTTGA
ACCACCATTTCGCTCAAAGATGAACCTATTTGGCTTACGCCACAATATCTTCGTTGTCAG
ACCACCATTGATCTACCTCACTATGTACATATCCCCTATTTGAATATTACTGTTCCTTTT
CTTTGCTAAAAAAAAAAAAAAAAAAACATCCAGGGGGGGCC

Homology of Contig U35_6082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None