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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3733_PI390587928Hv_44K_v2GAACTTTCGACCTAGAGATCCATGTGCAGGTGAATCGAAAACAGAGACTTTTGCTGGAAA544GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.5651.7610.9810.8350.3060.431
Raw 537.027942.002459.263644.29079.051120.706



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56684.125739e-222164 - 22219857 / 58plus ABC12795
MLOCMLOC_56684.225029e-222093 - 21509857 / 58plus ABC12795
MLOCMLOC_56684.325679e-222158 - 22159857 / 58plus ABC12795
JLOC1JLOC1_36689.324105e-222103 - 21609857 / 58plus
JLOC1JLOC1_36689.222275e-221920 - 19779857 / 58plus
JLOC1JLOC1_36689.124065e-222099 - 21569857 / 58plus
Harvest21ABC432625771e-2315 - 749859 / 60minus
Harvest21ABC1279520022e-221925 - 19829857 / 58plusABC12795
Harvest35U35_52156183e-25545 - 60410060 / 60plus



Contig Sequence (618 bp)

>U35_5215 618 Hv_44K_v2
GTGGATATCTCAAGAATCGAAGGCTAGAGAAGCTTCCATTCTGCAATCCATAGAGAATGG
TGCTCAAACTTTGTTTGATATAGTTTCGAAGACTTATTGTGATGTAGACAGGAAATTATG
GGTTCCTGCATCATTTAATGTTCGCCTTCATGTTGATCATCTGAACTCTCAAGATAAACT
TCCCAAGGACTTCTCAACGGAAAAGTTCGAATCGAGCTGCGGAGCACATTTCATATTTTG
GTGGGGCGTTGCGTATGCCCAAGTCAGGAGCTCGCCAGCCTTTGTCATCGCGGTAAGTGC
CCTTGCCGCCGGTGGTCTGGCGATCGCGTATGCCCTCAGAAGGAACAACGGCAACCAGCC
CTAGGATTCTTCTCCGAGACATGTCGGTAATCCCCAATCCCATGTACACGCATCTGTCGA
CCTAGGATCGTGCTGCGAACTCCCAAGACTGTTCATGATTGCATATTTTGTGAACTTTGT
TCTGTATGCACACAACACAGGAGAGAAGTTCCCGGTCCTACGTTGTGTTACTCCTAAGCC
ACAGGAACTTTCGACCTAGAGATCCATGTGCAGGTGAATCGAAAACAGAGACTTTTGCTG
GAAAAAAAAAAAAAAAAA



Homology of Contig U35_5215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None