barSeed - Barley Seed Development Database

Probe CUST_37331_PI390587928

Source Contig U35_6098

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37331_PI390587928	Hv_44K_v2	TGGAGAGTGTTCTGAGAAAGCGTTGTCCCGTTTTGTTGACATCATCAGTCGTTGTATTCC	1095	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370788	2936	2e-24	2437 - 2496	100	60 / 60	plus	ABC36870
MLOC	MLOC_37116.1	804	2e-24	274 - 333	100	60 / 60	plus	ABC36870
JLOC1	JLOC1_23995.1	1040	8e-25	274 - 333	100	60 / 60	plus
Harvest21	ABC13232	1337	3e-25	1096 - 1155	100	60 / 60	plus
Harvest35	U35_6098	1337	3e-25	1096 - 1155	100	60 / 60	plus

Contig Sequence (1337 bp)

>U35_6098 1337 Hv_44K_v2
TGACGGGAAGCATGTTCGTGAAATGAATTTGGCCATACCAGCTGCTCTTGAGAAGCCTCC
TGAAAAGAGAGAAGAGCGTGTAATTAACTTGGAGCGAACAGAGTCGGATATTTTTGCTGT
GGAACCTCCGCCACCTCCACCACCACCGCCGCTGCCACCAGTGTCCCCACCACCACCTGC
GGCGGCGCCGCCTCCACCAGTGTCCCCGCCACCACCGCCGCCGCCACCAGTGTCCCCGCC
ACCACCTCCTCCTGTTGAAAAAGTGATTGTTAATCCTATTTTTAGGCCAGAAAAAAGAGC
TAGCACCCCACCAAGGGCAGGTCCCTCGACATCTGCAACATCCTTTTCTGTTGCAACACT
TCAGCAATATACAAATAGTTTCGGAGAGGAAAATTTAATAAGAGAGAGTAGGTTGGGAAA
AGTATATCTGGCAGAACTTCCTGAAGGCAAATTATTGGAAGTTATGAAGATAGACAATGC
CAATGGAAGAATACCAGTAGATGACTTTCTAGAGCTGGTTGCGTGTATATCAGATATTAG
ACACCCTAGCATCCTTGAGCTTGTTGGATACTGTGCAGAATATGGGCAGCGGTTACTTGT
TTATAACCACTTCAGTAGAAGAACACTACATGATGTGTTACATGAAAGAGAGGACTTAGA
TAGTGCACTATCTTGGATCGCCCGTCTCCAGGTTGCTCTTGGTTCAGCAAAAGCCTTAGA
GTATCTCCATGACACCTGTGAGCCTCCAGTAGTGCATCAGAATTTTGAACCATCAAATGT
GCTTCTTGATAATAGATTCTCAGTACGTGTTGCTGAATGTGGACTGTCTGTATTGACGTT
GTCAAGTTCTGTTACACAGTTGTCTGGTCGCATGCGGGCACTACTAAATTATGAGGCACC
TGAAATCCAGGAATCTGGAACTTTTACTGATCGAAGTGATGTTTATAGTTTCGGTGTGGT
GATGCTAGAACTTCTTACTGGTCGTAAACCATATGACAGTTCTCGTCCGCGTCATGAACA
ACATCTTGTTAGATGGGCCCAGGCTCAGTTCCATGACATCGAATCACTAACAAAGATCGT
TGACCCTTTTATTCGTGGAGAGTGTTCTGAGAAAGCGTTGTCCCGTTTTGTTGACATCAT
CAGTCGTTGTATTCCGCCCGAACCAGAATTCAGGCCGCCAATGTCTGAGATTGTCCAAGA
CCTAGCTAGCATTTTAAGTGCTGCTGGTGAGGAATCGGAGTGATAAGCAAAATCAAGGAT
GGGCCATATATATAAATCGAATGTTGGCAGCGCAGCCAGTGAAGTATATTGAGATGAAAC
ATCTACTACCACATTCT

Homology of Contig U35_6098 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07960.2	737	0.0	protein\|STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed
Brachypodium v1_2	Bradi3g05670.1	788	0.0
Arabidopsis v10	AT4G03390.1	776	2e-100	\| Symbols: SRF3 \| STRUBBELIG-receptor family 3 \| chr4:1490912-1494553 REVERSE LENGTH=776