barSeed - Barley Seed Development Database

Probe CUST_3732_PI390587928

Source Contig U35_5216

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3732_PI390587928	Hv_44K_v2	GATTTCTCCTTAGAAATGTTCAGTGGAAGTTGCGATGAATTTATGTCTAGCCTGCAGCAG	914	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56684.1	2573	2e-24	1736 - 1795	100	60 / 60	plus	ABC12795
MLOC	MLOC_56684.3	2567	2e-24	1736 - 1795	100	60 / 60	plus	ABC12795
JLOC1	JLOC1_36689.3	2410	8e-25	1668 - 1727	100	60 / 60	plus
JLOC1	JLOC1_36689.1	2406	8e-25	1677 - 1736	100	60 / 60	plus
Harvest21	ABC12795	2002	3e-25	1503 - 1562	100	60 / 60	plus	ABC12795
Harvest35	U35_5216	1328	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (1328 bp)

>U35_5216 1328 Hv_44K_v2
TCGAATATGCGTTTGCGGACATTTACAAACTAGCGACCAGCCTTCTGGAGAGTGGAGAAC
CGGTGCATCGCATTGTTGGTCATCATCCCAATCTTGCAGCGCTATATGATCAACAAGAGT
TTGATAGATCGTGTCTTTTGTCGCAGTGGGCGGCGAGAATGGTGCATAGTGTCAAGCGTC
AAGGGTACGATTTTACTTGCTTTGCATCCATGAACGTATTCTGGTATATGATGCGATGGA
TGGTCTACCCTTCACCAGAGTCATATGCCGCCATGCCAGAATGGATTAGACCAATGTCAA
GCCAGCTTTTCACCCCTCACATCAGCATGGCTGATTTTGTGCTCTGGCCAGGGTTTCGCG
AACTCGTTGTGCAACTACCGCAGCTTCAAGAACGCATGGCATGGCTCGCAGACATGTCGT
TATATATCAATTGCGAATGGCCTTATCCGCTTGAACAGGCGTTGCATAGGGACCCTGTCT
CTGGGGATACAGATCTTGTGGATCTTGCAAAGCAGCATGTTTGGACACTAGGATGCTGGT
CGGTAGGACCTTCTTTTAGAAAATTTGTTCCAAACGCGGACTCCTATCTTTTGGTAAGGC
GGGAACAAGAACCAGAGAAATGTTTTCCGGGGGCAGTTTAAACAGAAAGGTAATGAGATA
GTAAGATTGTAATAGCGGCCGCTCCAATGCATGGAAGAATCAACCTATGGCCCAAGCATA
TGCTTTGTGGATATCTCAAGAATCGAAAGGCTAGAGAAGCTTCCATTCTGCAATCCATAG
AGAATGGTGCTCAAACTTTGTTTGATATAGTTTCGAAGACTTATTGTGATGTAGACAGGA
AATTATGGGTTCCTGCATCATTTAATGTTCGCCTTCATGTTGATCATCTGAACTCTCAAG
ATAAACTTCCCAAGGATTTCTCCTTAGAAATGTTCAGTGGAAGTTGCGATGAATTTATGT
CTAGCCTGCAGCAGTGACCGACTTCTCAACGGAAAAGTTCGAATCGAGCTGCGGAGCACA
TTTCATATTTTGGTGGGGCGTTGCGTATGCCCAAGTCAGGAGCTCGCCAGCCTTCGTCGT
CGCGGCAAGTGCCCTTGCCGCCGGTGGTCTGGCGATCGCGTATGCACTCAGAAGGAACAA
CGGCAACCAGCCCTAGGGTTCTTCTCCGAGACATGTCGGTAATCCCCAATCCCATGTACA
CGCATCCGTCGACCTAGGATCGTGCTGCGAACTCCCAAGACTGTTCATGATTGCATATTT
TGTGAACTTTGTTCTGTATGCACACAACACAGGAGAGAAGTTCCCGGTCCCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_5216 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None