barSeed - Barley Seed Development Database

Probe CUST_37323_PI390587928

Source Contig U35_11108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37323_PI390587928	Hv_44K_v2	AGTGATACATGAATAAAAGCAGGAATGAAAGACAAATCGTCGTCTGTTACGCTCAAAAAA	430	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.439	1.799	1.237	0.913	0.368	0.521
Raw	179.229	361.324	212.076	246.043	34.756	53.685

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357435	1248	3e-21	1185 - 1238	100	54 / 54	plus	ABC32634
JLOC1	JLOC1_48665.2	1851	2e-21	1188 - 1241	100	54 / 54	plus
JLOC1	JLOC1_48665.1	1796	2e-21	1133 - 1186	100	54 / 54	plus
Harvest21	ABC32634	501	3e-25	431 - 490	100	60 / 60	plus	ABC32634
Harvest35	U35_11108	501	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_11108 501 Hv_44K_v2
GCTTTTGCGATGATTTGGATGGTCTCTTGTTGGAGAGTCTTGGAGCATCATATAGGATTG
CTTCTCGCGGAGACCCTCGCTGTTCAGACCAGTTCCAATAGTCCCTGAAGGGACACCCCC
ATCAGCTCCCGCGACTGCCAACACAAGTGCCCTGACATTTGAAGCTAACCTGACTTCATG
TACTAGCGCATTCCTGATCCCGCAAAGCGGTCCTTCACCATTGCCTCCTGCGACTGCGAA
GACAGCACATCCAGCAGAGAACAAGGATCTGGAGCTGACAGTTGGCCTGCCGTCCCAACA
AAACATGACCAACAGCATTTCTTCCCGGAATGGGGTAGGCGTGATCCAAGTCGTTTAAGC
TAATAATTATTCTTTTGGGAGTCGCATTGTTGTTATAGACAGTTGACAGAATAAACACTA
GCATTTTATTAGTGATACATGAATAAAAGCAGGAATGAAAGACAAATCGTCGTCTGTTAC
GCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_11108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None