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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37321_PI390587928Hv_44K_v2CAGTGCCCTGTGGCATTGGTTAAACCCATTCGCTAGTATCGGTTTTCGGACTTTAAAAAA548GeneList: lightcyan1
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2080.3110.9542.0481.0901.458
Raw 297.139669.5071862.9405781.5031207.9661718.407



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_54319.318073e-21119 - 17210054 / 54minus ABC25780
MLOCMLOC_54319.420183e-2147 - 10010054 / 54minus ABC25780
MLOCMLOC_54319.122753e-21222 - 27510054 / 54minus ABC25780
MLOCMLOC_54319.222153e-21222 - 27510054 / 54minus ABC25780
JLOC1JLOC1_34958.424052e-212252 - 230510054 / 54plus
JLOC1JLOC1_34958.324562e-212303 - 235610054 / 54plus
JLOC1JLOC1_34958.222162e-212063 - 211610054 / 54plus
JLOC1JLOC1_34958.122812e-212128 - 218110054 / 54plus
Harvest21ABC257806193e-25549 - 60810060 / 60plusABC25780
Harvest35U35_111106193e-25549 - 60810060 / 60plus



Contig Sequence (619 bp)

>U35_11110 619 Hv_44K_v2
TTGGGAGCGGTAGCCTGCTTGACGGTATGGACAACTACCACCCCATTGCAGAGAATGCGC
AGTCTGAGCCTTTCAGTGACTGGGCTTGGGCGGAGGTGCAGAAATTCTGGACGAACCAGA
TGGAAGGACAGGGGCAGGAGCAGCAAGGCCTTGAACTAGTGGATCTGCTCCAGGTAGACG
GCATTTCACCAGAGGAACTGCTCCAGGAAGACGAATCCTGGAACCAGGCGCTTCAGCAGG
CAAACCCGGCAAACGTCGTCGTGGACGAACCCATGGCTGAAGAACCCGTCGCTGGAGACG
CCCCGGTGTACGATCCTGTGAACCAGTCCGGTGTCGCCGACAACATGTTCTCGGTCTGGA
GCCCCCAGTTTGCGGGCGACGACTACGGCATGCCGTTCTAGGCCCCGCCGGAAGAGGGAC
AACTGAAGAACTGATTTTTATCTTATAATATAATAATCTAAGACTGGTGAACAGTATAAG
CAATAAAGGTTCCTGGGGGAAATCCTCGGGAGATATATGGGAGAGCTGCTGATGCTCGGA
CATGTTTCCAGTGCCCTGTGGCATTGGTTAAACCCATTCGCTAGTATCGGTTTTCGGACT
TTAAAAAAAAAAAAAAAAA



Homology of Contig U35_11110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None